Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30900
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    43   5e-05
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    28   1.1  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    27   2.0  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   2.6  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.6  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   6.1  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.1  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.0  

>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = +2

Query: 302 RELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPR 478
           ++  Q+ L  P +   IV  +   Q+ TV EVGPG G +T  ++ +A +K++ +E DPR
Sbjct: 26  KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKA-RKVIAVEMDPR 83


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 374 QNHTVCEVGPGPGGITRSIIRQAPKKLVLIE 466
           +  T+ E+G G G +T  II   PK+++ ++
Sbjct: 36  ETSTILELGAGSGKLTPRIIASQPKEIIAVD 66


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 386 VCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 493
           + E+G G G  T  II   PK+++ ++  P  L  L
Sbjct: 44  ILELGAGTGKFTPRIIASHPKEIIAVDVYPEMLDVL 79


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 346 QNSACLR*YSESYRL*SWTRPGWNN 420
           +NSAC R Y E+ R  SW+R   NN
Sbjct: 100 RNSACDRYYQEALRKKSWSRSLSNN 124


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +1

Query: 58  VQKLQVISKRNRLTGFTIGAGVLGV----YLYSIFAIKQETFLDDFDEPPKI 201
           +  L++    ++ T   IGAG+ G+     L ++FA  ++ FL   ++PP+I
Sbjct: 246 ISSLKLDESLSQKTVAIIGAGMAGISCARQLTNLFAQYEQDFLSRGEKPPRI 297


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 299 LRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSI-IRQAPKK 451
           L EL+ N     R +D I R    +++  VC VG GP G++ +I I+Q   K
Sbjct: 71  LNELTDNL----RKLDTIER---EVEDVDVCIVGAGPAGLSAAIRIKQQAAK 115


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 99  GLHDRSRSVGCLLVFYLRHQTGDVP*RFRRAPENTAVIMAVAKTALQIRLPPYQASRMSS 278
           G H  S++V   LV  L H +G V    +  P N        K  L + + P  A +  +
Sbjct: 305 GSHFPSKTVPLALVIRLTHVSGKVRLLIKPPPSNRVWYAFYEKPRLHLIVEPMVARKQLT 364

Query: 279 NS 284
           N+
Sbjct: 365 NN 366


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 161 RRRSLTISTSPRKYSSNHGRR*NCITDKAAS----IPSIKDVI 277
           +  S + + SPR+  S HG R  C++  A+S    +  IK+++
Sbjct: 498 KNHSKSNTLSPRRKGSRHGPREPCLSPDASSSSIPVTDIKEIL 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,676
Number of Sequences: 5004
Number of extensions: 65674
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)