Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30900
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0111 + 5381779-5382117,5382775-5382798 52 6e-07
07_03_0548 + 19349943-19350290,19350372-19351100 49 4e-06
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 37 0.018
09_01_0116 - 1797740-1797788,1798087-1798166,1798245-1798424,179... 29 3.6
07_01_1103 + 10141766-10143583 28 6.3
01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688 28 6.3
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 28 6.3
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 28 8.4
06_03_0102 - 16662937-16663245 28 8.4
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211... 28 8.4
>10_02_0111 + 5381779-5382117,5382775-5382798
Length = 120
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +2
Query: 314 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 493
Q+ L P L+D IV +G TV E+GPG G +T+ +++ K +V +E DPR + L
Sbjct: 40 QHILRNPALVDSIVEKAGLKPTDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRMVLEL 99
>07_03_0548 + 19349943-19350290,19350372-19351100
Length = 358
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = +2
Query: 287 KLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIE 466
+ R + Q+ L PR++D IVR + V EVGPG G +T ++ ++ +E
Sbjct: 34 RFRLHKPRGQHLLTNPRVLDAIVRRAALRPGDAVLEVGPGTGNLTVRLLESPAARVSAVE 93
Query: 467 KDPRFLPSLELLADLVEIKSMLTL*R 544
DPR + ++ D + + LT+ R
Sbjct: 94 IDPRMVDAVTARVDALGLAHKLTVIR 119
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 36.7 bits (81), Expect = 0.018
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +2
Query: 314 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKD 472
+N+++ ++ +++V A+G + V E+GPG G +T +++ A + +EKD
Sbjct: 25 ENYMLNSKVNEELVAAAGVEEGDVVLEIGPGTGSLTAALL-DAGATVFAVEKD 76
>09_01_0116 -
1797740-1797788,1798087-1798166,1798245-1798424,
1799223-1799324,1801026-1801178,1801804-1801932,
1802791-1802930,1803941-1804066,1805792-1805963
Length = 376
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 128 VFTCILSSPSNRRRSLTISTSPRKYSSNHGRR*NCITDKAASIPSIKDVIKLYKLRALRE 307
+ C+L + +N +T+P + ++NHGRR I + + S + + + +
Sbjct: 173 IMKCLLDAGANPNIPDEFNTTPIEVAANHGRR--DIVEMLFPLTSPISTLSDWSIDGIIS 230
Query: 308 LSQNFLMEPRLIDKIVRASGNIQ 376
+NF ++PR D R S ++
Sbjct: 231 HVENFGLKPRDNDLSKRKSAELK 253
>07_01_1103 + 10141766-10143583
Length = 605
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -1
Query: 510 RSAKSSNDGKNRGSFSIKTSFLGACLIIDRVIPPGPGPTS 391
R +S DG R + +++ L+ +RV+PP P P S
Sbjct: 171 REPQSGEDGVGRARAAPQSAGTETALLEERVMPPQPAPQS 210
>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
Length = 241
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 472 PSVLTIVGAFSRSCRDKVDVD--IITGDILKTDLSQFIPSDAKV 597
PS+ +G ++CR +V+V+ +I G L T LSQ +A V
Sbjct: 134 PSLANSLGTLCKACRPEVEVEALVIQGPKLATVLSQVKKLEASV 177
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -1
Query: 501 KSSNDGKNRGSFSIKTSFLGACLIIDRVIPPGPGPTSQT 385
KSS G GSF K+ G+ ID IP PGP S T
Sbjct: 377 KSSGQGGFFGSFFRKSLKKGSFHDIDPGIPTTPGPQSAT 415
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 557 FKISPVIMSTSTLSRQDRLKAPTMVRTEGLFQLKQV 450
FKI+ S + R K PTM +T+G F+L V
Sbjct: 331 FKIAETQESAEEIETYQRYKYPTMSKTQGNFKLTVV 366
>06_03_0102 - 16662937-16663245
Length = 102
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 314 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPG 412
Q+ L P L+D IV +G TV E+G G
Sbjct: 39 QHILRNPALVDSIVEKAGLKPTDTVLEIGSARG 71
>03_01_0273 -
2107778-2108772,2108857-2109043,2109121-2110575,
2110670-2111251
Length = 1072
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +1
Query: 136 LYSIFAIKQETF-LDDFDEPPKIQQ*SWPSL 225
L +IF +K+ET LD+ DE ++ + +WP+L
Sbjct: 320 LQAIFDLKEETVVLDEVDELLELMRRTWPTL 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,685,266
Number of Sequences: 37544
Number of extensions: 419946
Number of successful extensions: 1081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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