Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30900
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4493| Best HMM Match : RrnaAD (HMM E-Value=0.014)                   82   4e-16
SB_47744| Best HMM Match : RrnaAD (HMM E-Value=5.2e-06)                43   2e-04
SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)            29   3.7  

>SB_4493| Best HMM Match : RrnaAD (HMM E-Value=0.014)
          Length = 192

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 40/95 (42%), Positives = 62/95 (65%)
 Frame = +2

Query: 254 IPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSII 433
           +P + D+++LY L A ++ SQNF+++  + DKI + S ++ +  VCEVG GPG +TRSI+
Sbjct: 8   MPKVSDLLRLYGLTAQKQFSQNFILDLNITDKIAKVS-DVFDCYVCEVGAGPGSLTRSIL 66

Query: 434 RQAPKKLVLIEKDPRFLPSLELLADLVEIKSMLTL 538
               + +  +E D RFLPSL+LL D    K  +TL
Sbjct: 67  NAGARHVAAVEIDRRFLPSLQLLEDAA--KGRMTL 99


>SB_47744| Best HMM Match : RrnaAD (HMM E-Value=5.2e-06)
          Length = 401

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/72 (29%), Positives = 39/72 (54%)
 Frame = +2

Query: 287 KLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIE 466
           K R+    +  ++ +  L +++ +   N+Q H V E  PGPG +TR++I    K+++ +E
Sbjct: 45  KPRSYTVKNYKYITDRDLAERVAKVL-NVQGHCVIEASPGPGMLTRAMIDSGAKQVIGLE 103

Query: 467 KDPRFLPSLELL 502
            D  F+  L  L
Sbjct: 104 PDKIFMEDLRSL 115


>SB_37086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +2

Query: 260 SIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQ-NHTVCEVG---PGPGGITRS 427
           +++DV+K+ +  A +  S N  + P++I+K  + SGNI  N  +       PG  G T  
Sbjct: 94  NVQDVLKVTRTYAPKIDSGNLRIVPQIINKATQNSGNINFNLDLSPTRITLPGTAGSTVC 153

Query: 428 IIRQAP 445
            I Q+P
Sbjct: 154 SIAQSP 159


>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
          Length = 1405

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 125  WVFTCILSSPSNRRRSLTISTSPRKYSSNHG 217
            W ++C++   SN R  + + T  R   SN G
Sbjct: 1074 WAYSCVIGRTSNGRAEVAVKTDKRLLMSNTG 1104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,535,418
Number of Sequences: 59808
Number of extensions: 471186
Number of successful extensions: 1054
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)