Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30900
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...    83   2e-16
U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    48   7e-06
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    40   0.002
AY204188-1|AAO39192.1|  364|Caenorhabditis elegans nuclear recep...    30   1.4  
AF100669-6|AAM97937.1|  242|Caenorhabditis elegans Nuclear hormo...    30   1.4  
AF100669-5|AAU05545.1|  364|Caenorhabditis elegans Nuclear hormo...    30   1.4  
AF100669-4|AAM97936.1|  395|Caenorhabditis elegans Nuclear hormo...    30   1.4  
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    30   1.9  
AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    28   5.7  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/93 (39%), Positives = 62/93 (66%)
 Frame = +2

Query: 254 IPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSII 433
           +P+++D I +Y+LRA + LSQN+LM+  +  KI + +  I+   V E+GPGPGGITR+I+
Sbjct: 10  LPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGITRAIL 69

Query: 434 RQAPKKLVLIEKDPRFLPSLELLADLVEIKSML 532
                +L ++E D RF+P L+ LA+  + +  +
Sbjct: 70  EAGASRLDVVEIDNRFIPPLQHLAEAADSRMFI 102


>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 20/63 (31%), Positives = 42/63 (66%)
 Frame = +1

Query: 1   LKQAEIAYMKLIEERNRERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQETFLDD 180
           L + +  + K  E+ N+ERV+++   + +N ++   +   V+G+Y Y+++++KQETFL++
Sbjct: 55  LPRPQKRFAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFLEE 114

Query: 181 FDE 189
            DE
Sbjct: 115 IDE 117


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = +2

Query: 314 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 493
           Q+ L  P +++ IV  S      TV EVGPG G +T  ++  A K ++  E DPR +  +
Sbjct: 30  QHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVA-KTVIACEIDPRMIAEV 88

Query: 494 E 496
           +
Sbjct: 89  K 89


>AY204188-1|AAO39192.1|  364|Caenorhabditis elegans nuclear receptor
           NHR-104 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 183 RRAPENTAVIMAVAKTALQIRLPPYQASRMSSNSTNYALYESCHRI 320
           RR PEN A+I++ + + LQ+ +P    + +SS   NYA  E+   I
Sbjct: 85  RRNPENRALIISPSTSQLQVTIP---ITLLSSVKRNYAELENVREI 127


>AF100669-6|AAM97937.1|  242|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform b protein.
          Length = 242

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 183 RRAPENTAVIMAVAKTALQIRLPPYQASRMSSNSTNYALYESCHRI 320
           RR PEN A+I++ + + LQ+ +P    + +SS   NYA  E+   I
Sbjct: 85  RRNPENRALIISPSTSQLQVTIP---ITLLSSVKRNYAELENVREI 127


>AF100669-5|AAU05545.1|  364|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform c protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 183 RRAPENTAVIMAVAKTALQIRLPPYQASRMSSNSTNYALYESCHRI 320
           RR PEN A+I++ + + LQ+ +P    + +SS   NYA  E+   I
Sbjct: 85  RRNPENRALIISPSTSQLQVTIP---ITLLSSVKRNYAELENVREI 127


>AF100669-4|AAM97936.1|  395|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 104, isoform a protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +3

Query: 183 RRAPENTAVIMAVAKTALQIRLPPYQASRMSSNSTNYALYESCHRI 320
           RR PEN A+I++ + + LQ+ +P    + +SS   NYA  E+   I
Sbjct: 85  RRNPENRALIISPSTSQLQVTIP---ITLLSSVKRNYAELENVREI 127


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 361 GTHY-FVNKSRFHEKIL*QLS*SA*FVEFDDILDAWYG 251
           G HY FV+K +FHE      + S  FVEF +    WYG
Sbjct: 516 GVHYHFVSKQKFHED-----AKSGKFVEFGEYQKFWYG 548


>AC024770-5|AAK84605.2|  684|Caenorhabditis elegans Hypothetical
           protein Y39H10A.6 protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = -1

Query: 693 SPNPSLRIKIGRHAKW*IAQ*GELV---EGGIQPVDFCITRYKLT*ICFQNITRYNVNID 523
           S   S  I + + AK  + + GE+    EG I  ++FC  + K   IC   + RYN+ I 
Sbjct: 272 SGGKSNSITLWKCAKSKLTRIGEMAPINEGDIAYMEFC-QQNKYLLICGGQMARYNLTIF 330

Query: 522 FISTRS 505
            I+TRS
Sbjct: 331 DIATRS 336


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +3

Query: 6   AGRNSLYEINRREKSRTRSKITSDFETQSTDGLHDRSRSVGCLLVFYLRHQTGDVP*RFR 185
           AGRN  Y+I    K R  S+IT++  T S            C L+F L H+  +     R
Sbjct: 365 AGRNITYQIKYTLKDRNSSQITNEL-TDSNLKCPKFECQWKCALIFNLPHRPREYKFEIR 423

Query: 186 RAPEN 200
              +N
Sbjct: 424 AKVDN 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,785,023
Number of Sequences: 27780
Number of extensions: 360571
Number of successful extensions: 817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)