Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30900
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 505  RSCRDKVDVDIITGDILKTDLSQFIPSDAKVHWLDSTFHQFTSLGNLPFSVSTN 666
            R+C+  V + ++  ++   D+S  +PSDA +          + + NL  S+  +
Sbjct: 1322 RTCQKAVVLSMLLDEV---DISMEVPSDALIALYSQGLFSLSEIDNLDVSLDVS 1372


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 85  VSKSLVIFERVRDFSLRLISY 23
           ++KSL   ++ RD SLR+I Y
Sbjct: 508 LNKSLKYSDKERDLSLRMILY 528


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 537 NVNIDFISTRSAKSSNDGKNRGSF 466
           NVN    +TR AKS+N   N+  +
Sbjct: 407 NVNNLIKNTRCAKSNNQNNNQNKY 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 519 ISTRSAKSSNDGKNR 475
           +S RS+ SSND KN+
Sbjct: 100 LSNRSSTSSNDPKNQ 114


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 474 GSFSIKTSFLGACLIIDRVIPPGPG 400
           GS+ + T  +GA L++     PG G
Sbjct: 152 GSWEVYTKGIGAKLLLQMGFEPGKG 176


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 218 GHDYCCIFGGSSKSSRNVSCLMAKIE 141
           GH   C  GG  KS  +   ++ K+E
Sbjct: 294 GHTVRCFTGGPRKSHESQCPMLQKLE 319


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 705 LEYPSPNPSL 676
           L YP PNPSL
Sbjct: 38  LVYPEPNPSL 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,418
Number of Sequences: 438
Number of extensions: 4551
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)