Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30900
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47420.1 68415.m05919 dimethyladenosine transferase, putative... 46 2e-05
At5g66360.2 68418.m08367 ribosomal RNA adenine dimethylase famil... 44 1e-04
At5g66360.1 68418.m08366 ribosomal RNA adenine dimethylase famil... 44 1e-04
At1g01860.1 68414.m00104 dimethyladenosine transferase (PFC1) id... 37 0.015
At3g11420.1 68416.m01393 fringe-related protein similar to hypot... 32 0.43
At5g37470.1 68418.m04509 hypothetical protein contains Pfam PF04... 30 1.3
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC... 30 1.7
At5g61240.1 68418.m07681 leucine-rich repeat family protein cont... 29 4.0
At5g52560.1 68418.m06527 UDP-N-acetylglucosamine pyrophosphoryla... 29 4.0
At5g07360.1 68418.m00840 amidase family protein low similarity t... 28 5.3
At4g09440.1 68417.m01554 hypothetical protein contains Pfam PF04... 28 7.0
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long... 28 7.0
At5g28480.1 68418.m03462 hypothetical protein 27 9.2
At4g39270.2 68417.m05561 leucine-rich repeat transmembrane prote... 27 9.2
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote... 27 9.2
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 27 9.2
At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive eff... 27 9.2
At1g44760.1 68414.m05128 universal stress protein (USP) family p... 27 9.2
At1g04940.1 68414.m00491 tic20 family protein similar to Tic20 (... 27 9.2
>At2g47420.1 68415.m05919 dimethyladenosine transferase, putative
similar to SP|P41819 Dimethyladenosine transferase (EC
2.1.1.-) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
dimethyltransferase) {Saccharomyces cerevisiae};
contains Pfam profile PF00398: ribosomal RNA adenine
dimethylase family protein
Length = 353
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 314 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 493
Q+ L P L+D IV+ +G + E+GPG G +T+ ++ +A K+++ +E D R + L
Sbjct: 34 QHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLL-EAGKEVIAVELDSRMVLEL 92
Query: 494 E 496
+
Sbjct: 93 Q 93
>At5g66360.2 68418.m08367 ribosomal RNA adenine dimethylase family
protein similar to SP|P41819 Dimethyladenosine
transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00398: ribosomal
RNA adenine dimethylase family protein
Length = 380
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +2
Query: 314 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 493
Q+ L R++D IVR+S TV E+GPG G +T ++ +A + +V +E D R + L
Sbjct: 69 QHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLL-EAAQNVVAVELDKRMVEIL 127
>At5g66360.1 68418.m08366 ribosomal RNA adenine dimethylase family
protein similar to SP|P41819 Dimethyladenosine
transferase (EC 2.1.1.-) (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00398: ribosomal
RNA adenine dimethylase family protein
Length = 352
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +2
Query: 314 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 493
Q+ L R++D IVR+S TV E+GPG G +T ++ +A + +V +E D R + L
Sbjct: 69 QHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLL-EAAQNVVAVELDKRMVEIL 127
>At1g01860.1 68414.m00104 dimethyladenosine transferase (PFC1)
identical to dimethyladenosine transferase GB:AAC09322
GI:3005590 from [Arabidopsis thaliana]
Length = 343
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 302 RELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRF 481
+ L Q++++ + D++ A+ + V E+GPG G +T +I L IEKDP
Sbjct: 73 KSLGQHYMLNSDINDQLASAADVKEGDFVLEIGPGTGSLTNVLINLGATVLA-IEKDPHM 131
Query: 482 L 484
+
Sbjct: 132 V 132
>At3g11420.1 68416.m01393 fringe-related protein similar to
hypothetical protein GB:AAC23643 [Arabidopsis thaliana]
+ weak similarity to Fringe [Schistocerca
gregaria](GI:6573138);Fringe encodes an extracellular
protein that regulates Notch signalling.
Length = 505
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 128 VFTCILSSPSNRRRSLTISTSPRKYSSNHGRR*NCITDKAASIP 259
V TC++ S S R+ +S S R YS+ +G + + KA ++P
Sbjct: 40 VLTCLIVSVSLVLRATFLSPSARDYSTTYGLKLTAVPQKAIALP 83
>At5g37470.1 68418.m04509 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 629
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 260 SIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEV 397
S K IKL ++R L+ L + L + R+ D + + G + NH V E+
Sbjct: 372 SKKVEIKLSEMRELQALLISCLKQERISDSMFKVLGKVVNHVVYEM 417
>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 1495
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 155 SNRRRSLTISTSPRKYSSNHGRR*NCITDKAASIPSIKDVIKLYKLRALRELSQN 319
S+ +RS + T +Y S HGRR + D A +PS+K + + + R+ S N
Sbjct: 220 SSSKRSNDVCTY--RYCSLHGRRHSHAADNNAGVPSLKRFVSMRRKFMNRQKSVN 272
>At5g61240.1 68418.m07681 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 380
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 287 KLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGP-GGITRSIIR 436
+L AL EL +L E RLI +I G +QN +VG G R +IR
Sbjct: 218 ELAALPELRYLYLQENRLIGRIPAELGTLQNLRHLDVGNNHLVGTIRELIR 268
>At5g52560.1 68418.m06527 UDP-N-acetylglucosamine
pyrophosphorylase-related contains weak similarity to
UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
(Swiss-Prot:O74933) [Candida albicans]
Length = 614
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 326 MEPRLIDKIVRASGNIQNHTVCEVG--PGPGGITRSIIRQAPKK 451
+E +D ++RASG CE G P PG I + I+ P K
Sbjct: 337 VEYNQLDPLLRASGFPDGDVNCETGFSPFPGNINQLILELGPYK 380
>At5g07360.1 68418.m00840 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 659
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 198 NTAVIMAVAKTALQIRLPPYQASRMSSNSTNYALYESCHRIF--SWNRDL 341
N + +AK A ++ +P Y+A+R + N L +F SWNR++
Sbjct: 126 NETKLQEIAKGATEMNVPIYRANRKLVATKNGGLENPSPLVFNPSWNREV 175
>At4g09440.1 68417.m01554 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577); common family
comprised of At4g09440, At1g66000, At1g66060
Length = 177
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 290 LRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEV 397
+R L+ L + L + R+ + R G + NH VCE+
Sbjct: 1 MRELQTLLISCLKQERISGSMFRVLGKVVNHVVCEM 36
>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 746
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 386 VCEVGPGPGG-ITRSIIRQAPKKLVLIEKDPRFLPS 490
V VG G GG + S++ ++ K+V++EK F PS
Sbjct: 235 VVVVGSGSGGGVAASVLAKSGLKVVVLEKGSYFTPS 270
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 161 RRRSLTISTSPRKYSSNHGRR*NCITDKAASIPSIKDVIKLYKLRALRELSQNFLM 328
+R+S+ ST PRK+ R N T K A+ S+ ++L + + + + FL+
Sbjct: 567 QRKSVKKSTKPRKFVPRRSSRLN-NTPKKAATGSLPVEVRLQHVPCVNTIEKRFLL 621
>At4g39270.2 68417.m05561 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinase erecta,
Arabidopsis thaliana
Length = 694
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 271 ILDAWYGGSLICNAVLATAMITAVFSGARRNRQGTS 164
++ A GGS++ +L IT F RRNR TS
Sbjct: 418 VILAAVGGSILLMLILIVLPITVSFCVRRRNRSSTS 453
>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinase erecta,
Arabidopsis thaliana
Length = 864
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 271 ILDAWYGGSLICNAVLATAMITAVFSGARRNRQGTS 164
++ A GGS++ +L IT F RRNR TS
Sbjct: 418 VILAAVGGSILLMLILIVLPITVSFCVRRRNRSSTS 453
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2
Query: 224 SDGHDYCCIFGGSSKSSRNVSCL 156
S G Y FGGS SS +VSCL
Sbjct: 219 SPGCGYAVEFGGSESSSYDVSCL 241
>At1g65810.1 68414.m07468 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1050
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 52 ERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQ 162
E V KL +S++ TG TI GV+ Y +FAI++
Sbjct: 698 EIVSKLYSVSRK---TGRTISVGVISPYKAQVFAIQE 731
>At1g44760.1 68414.m05128 universal stress protein (USP) family
protein contains Pfam profile PF00582: universal stress
protein family
Length = 213
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 472 PSVLTIVGAFSRSCRDKVDVD--IITGDILKTDLSQ 573
PS+ +G+ ++C+ +VDV+ +I G L T LSQ
Sbjct: 107 PSLAQSLGSLCKACKPEVDVEALVIQGPKLATVLSQ 142
>At1g04940.1 68414.m00491 tic20 family protein similar to Tic20
(GI:3769673) [Pisum sativum]; contains TIGRFAM IGR00994:
chloroplast protein import component, Tic20 family
Length = 501
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 611 PPSTSSPHWAIYHLACLPILI 673
PP T P W LACLP L+
Sbjct: 102 PPMTKKPQWWWRTLACLPYLM 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,621
Number of Sequences: 28952
Number of extensions: 339795
Number of successful extensions: 863
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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