Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30899
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    24   7.2  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        24   7.2  

>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 226 VSSQSIVLHTVT-DMNISHITLQPTTKYF*HSTRETMIMKNCTMEFI*CYTTIMKH 390
           VSS   VL  +  D+++++  L+P  K    S +    MK  T+E I  +  I+KH
Sbjct: 95  VSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQTKSSMKRNTVEEIERFQAILKH 150


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 17 RTTTNFTHMYSKVLNFATY 73
          +TTTN T + S+ +NF TY
Sbjct: 27 KTTTNSTLVASQEVNFTTY 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,335,609
Number of Sequences: 5004
Number of extensions: 21669
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)