Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30899
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04620.2 68418.m00464 aminotransferase class I and II family ...    28   1.9  
At5g04620.1 68418.m00465 aminotransferase class I and II family ...    28   1.9  
At4g35520.1 68417.m05049 DNA mismatch repair family protein simi...    27   4.5  

>At5g04620.2 68418.m00464 aminotransferase class I and II family
           protein similar to 8-amino-7-oxononanoate synthase,
           Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
           subtilis [SP|P53556]; contains Pfam protile PF00155
           aminotransferase, classes I and II
          Length = 476

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -3

Query: 136 EIFRIKHCNIFNLNTMVIYLKICRKI 59
           E+F  +HC++++LN+++   K+ RK+
Sbjct: 227 EVFVYRHCDMYHLNSLLSNCKMKRKV 252


>At5g04620.1 68418.m00465 aminotransferase class I and II family
           protein similar to 8-amino-7-oxononanoate synthase,
           Bacillus sphaericus, PIR:JQ0512 [SP|P22806], Bacillus
           subtilis [SP|P53556]; contains Pfam protile PF00155
           aminotransferase, classes I and II
          Length = 343

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -3

Query: 136 EIFRIKHCNIFNLNTMVIYLKICRKI 59
           E+F  +HC++++LN+++   K+ RK+
Sbjct: 94  EVFVYRHCDMYHLNSLLSNCKMKRKV 119


>At4g35520.1 68417.m05049 DNA mismatch repair family protein similar
           to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL
           protein homolog 3) {Homo sapiens}; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF01119: DNA mismatch
           repair protein, C-terminal domain
          Length = 1151

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +1

Query: 1   LVPFLKNYNQFHSHVFQ---GIKFCDIF*DKLPSC 96
           +VP + N  Q    V +   G  +CD++ DK P C
Sbjct: 534 VVPMIPNEKQSSPRVLETREGGSYCDVYSDKTPDC 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,003,967
Number of Sequences: 28952
Number of extensions: 116420
Number of successful extensions: 223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)