Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30898
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   4.7  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.7  
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom...    25   8.2  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = +3

Query: 39  SN*FIFTNLSSSVQRNIELSVYAIRRLSLQTCTRAPNNYNLYCSLIRRGFY 191
           SN +++  L    + ++ L ++ IRR +   C   PN+ N++  +++   Y
Sbjct: 320 SNLYVWKILQKRSEISVSL-LFTIRRANYGICDWIPNSSNMFSMIVKNSLY 369


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 487  SERSASL-VLTRNIYLLKFKSAPSKIRLY*TNKIFRTNLCY 368
            +ERS +L  +TRN+  +K        RL   NKI    +C+
Sbjct: 979  AERSQALPFITRNLASIKSHELHEAYRLVKANKILEAQICF 1019


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 18  EQSHNLQSN*FIFTNLSSSVQRNIELSVYAIRRLS---LQTCTRAPNNYN 158
           +Q   LQSN  + TN SSS   + + SV ++ + S   L + +  P+N+N
Sbjct: 155 QQHQYLQSNHNVPTNNSSSATSSTKPSVQSVGQASYPFLSSVSNFPSNFN 204


>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 51  IFTNLSSSVQRNIELSVYAIRRLSLQTCTRAPNNYNLYCS 170
           IF NL       +  +V+   +LSLQ C     +   YC+
Sbjct: 13  IFENLLKDYTHELTQTVHKNAKLSLQKCPACNKHCRQYCT 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,286
Number of Sequences: 5004
Number of extensions: 47337
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)