Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30898
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31117| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  

>SB_31117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 50  YFYKFELERSKEYRTKCLCYSTAVLTNLYTRAKQ 151
           +F+K EL+R KE+      Y T    ++Y  A++
Sbjct: 31  FFHKGELQRQKEFEVAMFMYRTGEQQSVYNNARK 64


>SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 51  IFTNLSSSVQRNIELSVYAIRRLSLQTCTRAPNNYNLYCSLIRRGFYKMIGRTIRIV*PH 230
           I T + ++V   +EL  YA++  SL   T  P+N +++ S I    Y    ++ R+  PH
Sbjct: 438 IDTMVCATVAGKVELHHYALKGYSLPEKTTLPDNRSVFTSPIISP-YLQAPKSFRLYKPH 496

Query: 231 Y 233
           +
Sbjct: 497 H 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,201
Number of Sequences: 59808
Number of extensions: 303866
Number of successful extensions: 486
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)