Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30897
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.0  
EF532798-1|ABQ08060.1|   50|Tribolium castaneum acetylcholineste...    22   6.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   6.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 574 CSFLL--GYWLPQLIASAPHFHLPMGFQE 654
           C+ LL  GY +    AS  + H P GF E
Sbjct: 844 CTLLLQRGYRVEYSAASDAYTHAPEGFNE 872


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 574 CSFLL--GYWLPQLIASAPHFHLPMGFQE 654
           C+ LL  GY +    AS  + H P GF E
Sbjct: 844 CTLLLQRGYRVEYSAASDAYTHAPEGFNE 872


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 574 CSFLL--GYWLPQLIASAPHFHLPMGFQE 654
           C+ LL  GY +    AS  + H P GF E
Sbjct: 844 CTLLLQRGYRVEYSAASDAYTHAPEGFNE 872


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +1

Query: 574 CSFLL--GYWLPQLIASAPHFHLPMGFQE 654
           C+ LL  GY +    AS  + H P GF E
Sbjct: 844 CTLLLQRGYRVEYSAASDAYTHAPEGFNE 872


>EF532798-1|ABQ08060.1|   50|Tribolium castaneum
           acetylcholinesterase protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 37  YLATWLQYRAHGKKHNDAQSHQRP 108
           YL  W+  R   + H D    +RP
Sbjct: 15  YLNIWVPQRLRIRHHGDKPPQERP 38


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 174 NTKPTLPLMCGNSFSRAGLL 115
           N KP +  +CG S++R   L
Sbjct: 246 NQKPNVCRICGKSYARPSTL 265


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = -1

Query: 281 WAGMTTDNGQWHQDELELGLCS 216
           WA    D G++H   ++  +C+
Sbjct: 33  WAIYRPDKGEYHPKNIDPNICT 54


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,770
Number of Sequences: 336
Number of extensions: 4987
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)