Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30897
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 131 1e-31
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.44
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 28 1.8
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.3
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.3
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 3.1
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 3.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 5.4
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 26 7.2
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 7.2
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 9.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 131 bits (317), Expect = 1e-31
Identities = 60/94 (63%), Positives = 73/94 (77%)
Frame = +1
Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 435
PL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNM
Sbjct: 116 PLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNM 175
Query: 436 LNISPFSYGLVVKQVYDSGTIFAPEFWDIKPEDL 537
LNISPF+YG+ V +YD G +F+PE D+ EDL
Sbjct: 176 LNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDL 209
Score = 104 bits (249), Expect = 2e-23
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = +2
Query: 2 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTR 181
DNV SQQM +R LRG++ ++MGKNTM+R+A++ +++ P LE+LLP ++GNVGFVFT
Sbjct: 31 DNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTN 90
Query: 182 GDLVEVRDKLLENKVQAPARPGAIA 256
DL EVR+ ++ N + APARP AIA
Sbjct: 91 ADLKEVRETIIANVIAAPARPNAIA 115
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 63 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 170
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.9 bits (59), Expect = 1.8
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +2
Query: 485 ILELFLHLNSGTSNQKISVPSSKLGVANVAALFFWAIGYPNLLLQPRISICQWVFKNLFG 664
I++L++++ GT N K +V V A W G+ IC+W +KN+F
Sbjct: 301 IVDLYIYVG-GTKNPKDTVSQFVQSVGTPAMQQHWTFGF---------HICRWGYKNVFD 350
Query: 665 HRLLVNRRFSFEESLTTIQREVQF 736
+ +FE + T ++ +
Sbjct: 351 LVEVKENFKNFEIPVDTFWSDIDY 374
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 129 RAGLLSRWSLMALRIIVFFPMSTILEPR 46
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 207 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 82
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 375 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWA---MAPGRAGAW 226
IVD NS + R + L ++G+L+ +GV GG + ++ M G AW
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYGPSLMPGGNPAAW 153
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 597 VTPTYCFSP----AFPFANGFSRTFLGIACWSTEGLVLKKA*PPFKGRFNLKGPI 749
V+P FS + PFAN + G + E V+ K F G+FN+ P+
Sbjct: 468 VSPNTAFSTNIPLSLPFANKEPQPIAGFKKNTPETSVVSKNLSTFNGKFNVNAPV 522
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 222 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 61
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.8 bits (54), Expect = 7.2
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 389 SPVT--RLELLKPPFSTC*TSLHSHMVLLLSRYMILELFLHLNSGTSNQKISVPSSKLGV 562
SPV+ R + + P ST + S + R +E F H+ +GT+ + PS+K V
Sbjct: 40 SPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHV-TGTAENRPQTPSTKASV 98
Query: 563 ANV 571
ANV
Sbjct: 99 ANV 101
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 545 LARRSSGLMSQNSGAKIVPESYTCLTTR 462
LAR SS SGAK+VP+ + +T +
Sbjct: 276 LARVSSSFGRPTSGAKVVPQIHNTVTVQ 303
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 493 TIFAPEFWDIKPEDLRAKFQA 555
T+FA FWDI ED+ FQ+
Sbjct: 535 TLFALTFWDILFEDVPGVFQS 555
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 375 IVDDFNSTL*NLGRDRKSL 319
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,649,693
Number of Sequences: 5004
Number of extensions: 80764
Number of successful extensions: 226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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