Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30897
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 141 7e-34
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 141 7e-34
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 140 2e-33
06_01_0080 + 644021-645463 33 0.35
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 3.3
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 29 3.3
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 4.3
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 5.7
11_01_0355 + 2679561-2680985,2681183-2682295 28 9.9
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 9.9
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571 28 9.9
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 9.9
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 28 9.9
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 141 bits (341), Expect = 7e-34
Identities = 71/128 (55%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 435
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 436 LNISPFSYGLVVKQVYDSGTIFAPEFWDIKPEDLRAKFQAG-SC*CSCSFLLGYWLPQLI 612
L I PFSYGLV+ VYDSG++F+PE D+ EDL KF +G S S S + Y I
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISY---PTI 237
Query: 613 ASAPHFHL 636
A+APH L
Sbjct: 238 AAAPHMFL 245
Score = 103 bits (248), Expect = 1e-22
Identities = 52/95 (54%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Frame = +2
Query: 2 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVF 175
DNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +F
Sbjct: 34 DNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIF 93
Query: 176 TRGDLVEVRDKLLENKVQAPARPGAIAHCQSSFPP 280
T+GDL EVR+++ + KV APAR G +A PP
Sbjct: 94 TKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPP 128
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 141 bits (341), Expect = 7e-34
Identities = 71/128 (55%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 435
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 436 LNISPFSYGLVVKQVYDSGTIFAPEFWDIKPEDLRAKFQAG-SC*CSCSFLLGYWLPQLI 612
L I PFSYGLV+ VYDSG++F+PE D+ EDL KF +G S S S + Y I
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISY---PTI 237
Query: 613 ASAPHFHL 636
A+APH L
Sbjct: 238 AAAPHMFL 245
Score = 103 bits (248), Expect = 1e-22
Identities = 52/95 (54%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Frame = +2
Query: 2 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVF 175
DNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +F
Sbjct: 34 DNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIF 93
Query: 176 TRGDLVEVRDKLLENKVQAPARPGAIAHCQSSFPP 280
T+GDL EVR+++ + KV APAR G +A PP
Sbjct: 94 TKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPP 128
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 140 bits (338), Expect = 2e-33
Identities = 70/128 (54%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 435
P+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL
Sbjct: 121 PVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAK 180
Query: 436 LNISPFSYGLVVKQVYDSGTIFAPEFWDIKPEDLRAKFQAG-SC*CSCSFLLGYWLPQLI 612
L I PFSYGLV+ VYDSG++F+PE D+ +DL KF +G S S S + Y I
Sbjct: 181 LGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISY---PTI 237
Query: 613 ASAPHFHL 636
A+APH L
Sbjct: 238 AAAPHMFL 245
Score = 104 bits (249), Expect = 9e-23
Identities = 52/95 (54%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Frame = +2
Query: 2 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVF 175
DNVGS Q+Q+IR LRG SIVLMGKNT++R+ IK H DN N +L+P + GNVG +F
Sbjct: 34 DNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIF 93
Query: 176 TRGDLVEVRDKLLENKVQAPARPGAIAHCQSSFPP 280
T+GDL EVR+++ + KV APAR G +A PP
Sbjct: 94 TKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPP 128
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.35
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 375 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 268
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 38 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 208
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 209 LLENKVQAPARP 244
+L++ A P
Sbjct: 432 ILDHNSFVGALP 443
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Frame = +3
Query: 714 PFKGRFNLKGPIQKF--------RCNFACPPVGNR 794
PFKGR NLK P KF CN PPV R
Sbjct: 157 PFKGRVNLKKPDHKFFVMETDDYGCNNGLPPVAQR 191
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 491 PESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL 369
PE LT RP +G+ FN LR ++ +PT G + S+
Sbjct: 358 PEKNEPLTLRPIASGK-FNQLRTISIISPTAKEGLQKTVSM 397
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 178 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 83
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 111 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 233
W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 250 GTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 122
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
Length = 740
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 335 GIERAWKKEVFSGPRPVLWAGMTTDNGQ 252
G+ R W K++ S P+ V+W NGQ
Sbjct: 365 GLARVWYKDLDSVPQYVVWEQPNAPNGQ 392
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 383 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 261
+CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +1
Query: 361 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFA 504
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVA 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,335,677
Number of Sequences: 37544
Number of extensions: 585685
Number of successful extensions: 1506
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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