Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30897
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        129   2e-30
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.067
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        33   0.27 
SB_58391| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)           30   1.9  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  29   5.8  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   7.7  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  129 bits (312), Expect = 2e-30
 Identities = 61/85 (71%), Positives = 71/85 (83%)
 Frame = +2

Query: 2   DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTR 181
           DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP LEKLLPHIKGN+GFVFT+
Sbjct: 15  DNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTK 74

Query: 182 GDLVEVRDKLLENKVQAPARPGAIA 256
            DL +VR  ++ENKV APA+ G IA
Sbjct: 75  EDLADVRKIIMENKVAAPAKAGVIA 99



 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 37/52 (71%), Positives = 46/52 (88%)
 Frame = +1

Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 411
           P+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 100 PIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 35.1 bits (77), Expect = 0.067
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +2

Query: 74  KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 190
           K T++RK +K HLDN P L K LP + G +  + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -3

Query: 375 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGNDD*QWA---MAPGRAGAW 226
           I+D  NS   +  R  K+LEERGLL+  +GV GG +  ++    M  G   AW
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYGPSLMPGGSEKAW 196


>SB_58391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 714 PFKGRFNLKGPIQKFRCNFAC 776
           PF+ RFNL+  +++ RC F C
Sbjct: 8   PFRMRFNLRTALERLRCMFVC 28


>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
          Length = 1336

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 714 PFKGRFNLKGPIQKFRCNFAC 776
           PF+ RFNL+  +++ RC F C
Sbjct: 8   PFRMRFNLRTALERLRCMFVC 28


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 606  TYCFSPAFPF--ANGFSRTFLGIACWSTE 686
            +Y   PA PF  AN  ++ F G++CW+TE
Sbjct: 1831 SYTQRPAHPFIGANVQTKPFTGLSCWTTE 1859


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 407  PTLSPGFKMCTSLMISIVPFEILVGIERAWKKEVFSGPR 291
            P   P F+ C +L+ ++  ++ +    RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQYM---RRAWRKEVISSQR 1878


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 219 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 109
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,944,705
Number of Sequences: 59808
Number of extensions: 639847
Number of successful extensions: 1685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)