Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30897
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   153   2e-37
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  153 bits (370), Expect = 2e-37
 Identities = 67/101 (66%), Positives = 84/101 (83%)
 Frame = +1

Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 435
           P  V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNM
Sbjct: 118 PCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNM 177

Query: 436 LNISPFSYGLVVKQVYDSGTIFAPEFWDIKPEDLRAKFQAG 558
           L ++PFSYGLVV+QVYD GT++ PE  D+  E+LR +F +G
Sbjct: 178 LGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSG 218



 Score =  129 bits (312), Expect = 2e-30
 Identities = 60/93 (64%), Positives = 74/93 (79%)
 Frame = +2

Query: 2   DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTR 181
           DNVGS+QMQ+IR ++RG + +LMGKNTM+RKA++ HL  NP+LEKLLPHI  NVGFVFT+
Sbjct: 33  DNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTK 92

Query: 182 GDLVEVRDKLLENKVQAPARPGAIAHCQSSFPP 280
            DL E+R KLLEN+  APA+ GAIA C    PP
Sbjct: 93  EDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPP 125


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = +2

Query: 5   NVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFT 178
           N+ S +   IR   + +S    GKN ++  A+     +  A  L K    +KG  G +FT
Sbjct: 47  NMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFT 106

Query: 179 RGDLVEVRDKLLENKVQAPARPGAIA 256
                EV  +  E   +  AR G +A
Sbjct: 107 NMSKKEVEAEFSEASEEDYARVGDVA 132


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +3

Query: 54  PVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 221
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,523,471
Number of Sequences: 27780
Number of extensions: 468559
Number of successful extensions: 1331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)