Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30897
(800 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 133 1e-31
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 132 3e-31
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 132 3e-31
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 34 0.096
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.7
At1g33410.1 68414.m04136 expressed protein 28 6.3
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 28 8.3
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 8.3
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 28 8.3
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei... 28 8.3
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei... 28 8.3
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 28 8.3
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 28 8.3
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 133 bits (322), Expect = 1e-31
Identities = 68/128 (53%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 435
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180
Query: 436 LNISPFSYGLVVKQVYDSGTIFAPEFWDIKPEDLRAKFQAG-SC*CSCSFLLGYWLPQLI 612
L I PFSYGLVV+ VYD+G++F PE ++ +DL KF AG S + S + Y +
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISY---PTV 237
Query: 613 ASAPHFHL 636
A+APH L
Sbjct: 238 AAAPHMFL 245
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLD--NNPALEKLLPHIKGNVGFVF 175
DNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H D N A LLP ++GNVG +F
Sbjct: 34 DNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIF 93
Query: 176 TRGDLVEVRDKLLENKVQAPARPGAIA 256
T+GDL EV +++ + KV APAR G +A
Sbjct: 94 TKGDLKEVSEEVAKYKVGAPARVGLVA 120
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 132 bits (318), Expect = 3e-31
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 435
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 120 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 179
Query: 436 LNISPFSYGLVVKQVYDSGTIFAPEFWDIKPEDLRAKFQAG-SC*CSCSFLLGYWLPQLI 612
L I PFSYGLVV+ VYD+G++F+PE D+ + L KF +G S S + + Y P L
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSY--PTL- 236
Query: 613 ASAPHFHL 636
A+APH +
Sbjct: 237 AAAPHMFI 244
Score = 100 bits (240), Expect = 1e-21
Identities = 48/87 (55%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVF 175
DNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++GNVG +F
Sbjct: 33 DNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIF 92
Query: 176 TRGDLVEVRDKLLENKVQAPARPGAIA 256
T+GDL EV +++ + KV APAR G +A
Sbjct: 93 TKGDLKEVSEEVAKYKVGAPARVGLVA 119
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 132 bits (318), Expect = 3e-31
Identities = 68/128 (53%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
Frame = +1
Query: 256 PLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNM 435
P+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL
Sbjct: 120 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 179
Query: 436 LNISPFSYGLVVKQVYDSGTIFAPEFWDIKPEDLRAKFQAG-SC*CSCSFLLGYWLPQLI 612
L I PFSYGLVV+ VYD+G++F+PE D+ + L KF +G S S + + Y P L
Sbjct: 180 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSY--PTL- 236
Query: 613 ASAPHFHL 636
A+APH +
Sbjct: 237 AAAPHMFI 244
Score = 100 bits (240), Expect = 1e-21
Identities = 48/87 (55%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNVGFVF 175
DNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++GNVG +F
Sbjct: 33 DNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIF 92
Query: 176 TRGDLVEVRDKLLENKVQAPARPGAIA 256
T+GDL EV +++ + KV APAR G +A
Sbjct: 93 TKGDLKEVSEEVAKYKVGAPARVGLVA 119
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 34.3 bits (75), Expect = 0.096
Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +1
Query: 301 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML--NISPFSYGLVVK 474
E + L +P +++KGT+E++ D + + G ++ A +L +L ++ F L+ +
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCR 208
Query: 475 QVYDSGTIFAPEFWDIKPEDL 537
++ + ++ EDL
Sbjct: 209 WSPSDFELYREDLSELYREDL 229
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 116 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 214
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 15 RNRCSRSVSRYVAPVSCSW--EKTQ*CAKPSKTTWTTIQPSRNCC 143
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 509 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEILVGI 330
+G+ PE+Y+ + PYE E + R +++ P +P + L+ + EI G
Sbjct: 371 NGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAELVAATERMEINEGD 427
Query: 329 E 327
E
Sbjct: 428 E 428
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 126 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 230
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 110 LDNNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAHCQSSFPPT 283
+ N P ++++ PHI VG + T+GD+ + D L + + + A+ S P+
Sbjct: 761 ITNQPVIQQVREKPHIAEWVGLMLTKGDIKSIMDPKLNGEYDSSSVWKALELAMSCVNPS 820
Query: 284 T 286
+
Sbjct: 821 S 821
>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 611
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 726 RFNLKGPIQKFRCNFACPPVGNR 794
+F++ G ++ RCNF+ VGNR
Sbjct: 283 KFSVGGTVEPSRCNFSACAVGNR 305
>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 601
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 726 RFNLKGPIQKFRCNFACPPVGNR 794
+F++ G ++ RCNF+ VGNR
Sbjct: 273 KFSVGGTVEPSRCNFSACAVGNR 295
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 27.9 bits (59), Expect = 8.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 263 DNGQWHQDELELGLCSPTVC 204
+N WHQ+ ++G+C T+C
Sbjct: 221 NNQLWHQNIQDIGVCEDTIC 240
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 726 RFNLKGPIQKFRCNFACPPVGNR 794
+F + G +Q RCNF+ VGNR
Sbjct: 294 KFTVGGIVQPSRCNFSACAVGNR 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,740,495
Number of Sequences: 28952
Number of extensions: 451947
Number of successful extensions: 1253
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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