Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30896
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   6.2  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    24   6.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.2  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 22   KYAFEYKVEDPHTGDNKYQHETRDGDVVK 108
            ++  +  V + H GD K+ H T   D++K
Sbjct: 1053 EHILKSSVVESHYGDAKFSHRTPSLDILK 1081


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 22  KYAFEYKVEDPHTGDNKYQ 78
           KYA E  ++D HT DN ++
Sbjct: 161 KYAIENIIKDLHTSDNTWR 179


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -2

Query: 121 DCTHPSPRHRHGSRAGTCCRRCEDPLLCTRKRI 23
           DC HP P   H      C    E   LC ++ I
Sbjct: 289 DCEHPCPLLCHPGPCPPCTATVEKFCLCGKESI 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,302
Number of Sequences: 5004
Number of extensions: 25590
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)