Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30896
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0313 + 2388488-2388560,2389285-2389462,2390221-2390331,239...    29   1.1  
07_01_0049 + 382526-383031,383385-384000                               28   2.5  
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    27   5.9  
04_01_0620 - 8151065-8151791,8152246-8152418                           26   7.7  

>12_01_0313 +
           2388488-2388560,2389285-2389462,2390221-2390331,
           2391280-2391362,2391826-2392027,2392078-2392101,
           2392234-2392408,2392482-2392683,2393897-2394036
          Length = 395

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +1

Query: 115 YSLHEADGTIRTVKYAADKHSGFNAEVHREGHAKHVVPEHQHGH 246
           + + E  G  ++ K+ ADKH  F AE       K      QH +
Sbjct: 70  HGVGEPRGRFKSFKWFADKHKMFTAEAETASSTKSTAQLQQHSY 113


>07_01_0049 + 382526-383031,383385-384000
          Length = 373

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
 Frame = +1

Query: 61  GDNKYQHETRDGDVVKGVYSLHEADGTI--RTVKYAADKHSGFNAEVHREGHAKHVVP-- 228
           G +    E R+  VV G   L  A G +  RT K  +  H+    +VH    A  V P  
Sbjct: 299 GRDDTSEEVRELAVVGGSGMLRRASGHVLWRTAKVESKLHAVLELDVHASVPAAAVAPSG 358

Query: 229 EHQHGH 246
              HGH
Sbjct: 359 SGSHGH 364


>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 46  EDPHTGDNKYQHETRDGDVVKGVYSLHEAD 135
           +DP T D+   +ET D   +   +  H+AD
Sbjct: 342 DDPETTDHPQDYETEDASQISEAHLDHQAD 371


>04_01_0620 - 8151065-8151791,8152246-8152418
          Length = 299

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -2

Query: 133 RPRADCTHPSPRHRHGSR-AGTCC 65
           R + DC  P  + RHG R  GT C
Sbjct: 32  RRQGDCIEPETQDRHGRRYGGTVC 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,812,525
Number of Sequences: 37544
Number of extensions: 171053
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)