Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30896
(359 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016) 30 0.65
SB_47890| Best HMM Match : DUF652 (HMM E-Value=7) 29 1.1
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_46976| Best HMM Match : PAN (HMM E-Value=6.9e-05) 28 2.6
SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77) 28 2.6
SB_35955| Best HMM Match : EMP24_GP25L (HMM E-Value=9.1) 28 2.6
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 28 2.6
SB_3662| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.5) 28 2.6
SB_31102| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06) 27 4.6
SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12) 27 4.6
SB_54024| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0025) 27 6.1
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_49271| Best HMM Match : DUF916 (HMM E-Value=4.4) 27 6.1
SB_16830| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40) 26 8.0
>SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)
Length = 872
Score = 29.9 bits (64), Expect = 0.65
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 37 YKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAADKHSGFNAEVHREGH 210
YK +P D + +DG KG Y L+ G++ +++ K G E GH
Sbjct: 135 YKTSNPTISDTTLEKRLQDGSPSKGSYYLNTI-GSLDILQWVVGKAGGAAPETTPSGH 191
>SB_47890| Best HMM Match : DUF652 (HMM E-Value=7)
Length = 384
Score = 29.1 bits (62), Expect = 1.1
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 22 KYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAAD 168
KYA KV P KY H+ + KG Y+L+ T+ KYA D
Sbjct: 79 KYALNVKV--PKLDKGKYAHDVTVPTLDKGKYALNVTVPTLDKGKYAFD 125
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 22 KYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYA 162
KYAF+ V P KY H+ + KG Y+L+ T+ KYA
Sbjct: 219 KYAFDVTV--PTLDKGKYAHDVTVPTLDKGKYALNVTVPTLDKGKYA 263
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 22 KYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAAD 168
KYA + V P KY H+ + KG Y+L+ T+ KYA D
Sbjct: 177 KYAHDVTV--PTLDKGKYAHDVTVPTLDKGKYALNVTVPTLDKGKYAFD 223
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 106 KGVYSLHEADGTIRTVKYAADKHSGFNAEVH 198
KG Y H+ DG RT++Y + G+ H
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAH 1772
>SB_46976| Best HMM Match : PAN (HMM E-Value=6.9e-05)
Length = 699
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 191 KCTVKVTPNM*CLNINMDISSRN*LHDLNNSTR 289
+C VK N CL+IN D S+ DLNN+T+
Sbjct: 33 ECNVKCFDNDNCLSINFDRISKK--CDLNNATK 63
>SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)
Length = 872
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 7 YHAHPKYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYS-LHEADGTIRTVKYAADKHSGF 183
Y+A YA ++ +TG N DG+ G Y+ + ADG YA ++G
Sbjct: 706 YYAGGNYADGNHIDGNYTGGNYADGNYADGNYADGNYAGGNYADGNYADGNYADGNYAGG 765
Query: 184 N 186
N
Sbjct: 766 N 766
>SB_35955| Best HMM Match : EMP24_GP25L (HMM E-Value=9.1)
Length = 308
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 22 KYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAAD 168
KYA KV P KY H+ + KG Y+L T+ KYA D
Sbjct: 184 KYALNVKV--PTLDKGKYAHDVTVPTLDKGKYALDVTVPTLDKGKYAFD 230
Score = 26.2 bits (55), Expect = 8.0
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 22 KYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYA 162
KYA KV P KY H+ + KG Y+L T+ KYA
Sbjct: 142 KYALNVKV--PTLDKGKYAHDVTVPTLDKGKYALDVTVPTLDKGKYA 186
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +1
Query: 109 GVYSLHEADGTIRTVKYAADKHS---GFNAEVHREGHAKHVVPEHQHGH 246
G +S + D ++ + AD H G + E H H H HGH
Sbjct: 288 GYFSTPDRDNDVKDSESCADGHGHSHGHSHENHGHSHENHGHSHENHGH 336
>SB_3662| Best HMM Match : Cu-oxidase_3 (HMM E-Value=2.5)
Length = 265
Score = 27.9 bits (59), Expect = 2.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 190 EVHREGHAKHVVPEHQHGH 246
EVH GH K+++ H GH
Sbjct: 192 EVHNTGHTKYIIRVHNTGH 210
Score = 26.2 bits (55), Expect = 8.0
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +1
Query: 34 EYKVEDPH-TGDNKYQ-HETRDGDVVKGVYSLHEADGTIRTVK---YAADK--HSGFNAE 192
+Y + H TG KY TR G + +H TIR + Y ++ +
Sbjct: 115 QYGSHEVHNTGHTKYIIRVTRSTQY--GSHEVHNTGYTIRVTRSTQYGVHNTGYTKYTIR 172
Query: 193 VHREGHAKHVVPEHQHG 243
VH GH K+++ Q+G
Sbjct: 173 VHNTGHTKYIIRGTQYG 189
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = +1
Query: 115 YSLHEADGTIRTVKYAADKHSGFNAEVHREGHAKHVVPEHQHGH 246
Y HE T T++ G VH G+ K+ + H GH
Sbjct: 139 YGSHEVHNTGYTIRVTRSTQYG----VHNTGYTKYTIRVHNTGH 178
>SB_31102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 131 PMVPSGLLNTRPTNTPDSTL 190
P P G+L T PTNTP S +
Sbjct: 103 PSTPFGILPTPPTNTPKSRI 122
>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
Length = 231
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 124 ADCTHPSPRHRHGSRAGTCCRRCEDPL 44
++C H RHR G R+G R P+
Sbjct: 129 SECDHEFARHRRGLRSGANVNRTSTPM 155
>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
Length = 917
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -2
Query: 106 SPRHRHGSRA----GTCCRRCEDPLLCTRKRI*DEHG 8
+PR HG R GT ++ E P++C DEHG
Sbjct: 875 TPREDHGGRTDILLGTWDKQVESPIICPLLDKVDEHG 911
>SB_54024| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0025)
Length = 223
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 127 EADGTIRTVKYAADK-HSGFNAEVHREGHAKHVVPEHQHG-H*LQ 255
E+D TI ++A ++GF+A R HAK P G H LQ
Sbjct: 54 ESDATIPDSSFSASSNYNGFDARYGRLNHAKSWEPSSSSGDHYLQ 98
>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 465
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 7 YHAHPKYAFEYKVEDPHTGDNKYQHETRDG 96
YH+HP Y + V+D + +YQH + G
Sbjct: 7 YHSHPSYQADPSVQDIKS-QLRYQHALQQG 35
>SB_49271| Best HMM Match : DUF916 (HMM E-Value=4.4)
Length = 491
Score = 26.6 bits (56), Expect = 6.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 22 KYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAAD 168
KYA + V P KY H+ + KG Y+ T+ VKYA D
Sbjct: 337 KYALDVTV--PTLDKGKYAHDVTVPTLDKGKYAHDVTIPTLDNVKYAHD 383
>SB_16830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 22 KYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYA 162
KYA + V P KY H+ + + KG Y+L+ T+ KYA
Sbjct: 11 KYALDVTV--PTLDKGKYAHDVKVPTLDKGKYALNVTVPTLDKGKYA 55
>SB_13742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 145 RTVKYAADKHSGFNAEVHREGHAKHVVPEHQHGH 246
RT ++A D H +A+ H + HA V H H
Sbjct: 31 RTCRHATDTHVYAHADTHVDAHAVTHVDAHADTH 64
>SB_25367| Best HMM Match : TPR_1 (HMM E-Value=2.4e-40)
Length = 553
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 203 KVTPNM*CLNINMDI 247
K+TPN+ CLN N+D+
Sbjct: 216 KLTPNLDCLNDNLDV 230
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,425,344
Number of Sequences: 59808
Number of extensions: 211088
Number of successful extensions: 656
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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