Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30896
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    32   0.14 
U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    31   0.24 
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    31   0.24 
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    31   0.24 
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    31   0.24 
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical...    27   3.0  
Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative transc...    27   5.2  
Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z68217-6|CAE17833.1|  198|Caenorhabditis elegans Hypothetical pr...    26   6.9  
U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory ...    26   6.9  
L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degeneri...    26   6.9  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 26/78 (33%), Positives = 32/78 (41%)
 Frame = +1

Query: 13  AHPKYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAADKHSGFNAE 192
           AH KY  E  + DP        H+   G    G    H+ADG     K AA + +   A 
Sbjct: 20  AHLKYTKE--MNDPEYVQQNVHHQGH-GHAHGGHGHAHDADGGCPYAKAAAAEAA--TAA 74

Query: 193 VHREGHAKHVVPEHQHGH 246
            H  GHA     +H HGH
Sbjct: 75  AHDHGHAH----DHDHGH 88


>U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +1

Query: 10  HAHPKYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAADKHSGFNA 189
           + HP     Y+ E P +  ++YQ   RD  + +  Y+  E   +    +Y  D+      
Sbjct: 13  YGHPP---RYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQQ--QQ 67

Query: 190 EVHREGHAKHVVPEHQH 240
           + H + H++H+  +H H
Sbjct: 68  QPHHQQHSQHL--QHSH 82


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +1

Query: 10   HAHPKYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAADKHSGFNA 189
            + HP     Y+ E P +  ++YQ   RD  + +  Y+  E   +    +Y  D+      
Sbjct: 1653 YGHPP---RYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQQ--QQ 1707

Query: 190  EVHREGHAKHVVPEHQH 240
            + H + H++H+  +H H
Sbjct: 1708 QPHHQQHSQHL--QHSH 1722


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +1

Query: 10   HAHPKYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAADKHSGFNA 189
            + HP     Y+ E P +  ++YQ   RD  + +  Y+  E   +    +Y  D+      
Sbjct: 1754 YGHPP---RYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQQ--QQ 1808

Query: 190  EVHREGHAKHVVPEHQH 240
            + H + H++H+  +H H
Sbjct: 1809 QPHHQQHSQHL--QHSH 1823


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +1

Query: 10   HAHPKYAFEYKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVKYAADKHSGFNA 189
            + HP     Y+ E P +  ++YQ   RD  + +  Y+  E   +    +Y  D+      
Sbjct: 1754 YGHPP---RYRTESPPSSRSEYQMSIRDPIIRRNRYNTMEHSRSSHDPQYHQDQQQ--QQ 1808

Query: 190  EVHREGHAKHVVPEHQH 240
            + H + H++H+  +H H
Sbjct: 1809 QPHHQQHSQHL--QHSH 1823


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 154 KYAADKHSGFNAEVHREGHAKHVVPEHQH 240
           K + DKH   N   H  G+  H    HQH
Sbjct: 719 KASQDKHRNINGHGHMNGNGTHTNGNHQH 747


>AL031627-20|CAA20952.1|  325|Caenorhabditis elegans Hypothetical
           protein Y102A5C.32 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 219 MFGVTFTVHFSVESGVFVGRV 157
           +FGV F + F +++G F+GR+
Sbjct: 257 LFGVAFILAFQLKNGQFIGRI 277


>Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical
           protein C40H5.5 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 100 RHRHGSRAGTCCRRCEDPL 44
           R  H  R   CCR+CE PL
Sbjct: 160 RADHAKRYQKCCRKCEIPL 178


>U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative
           transcription factor TTX-3 protein.
          Length = 409

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 100 RHRHGSRAGTCCRRCEDPL 44
           R  H  R   CCR+CE PL
Sbjct: 160 RADHAKRYQKCCRKCEIPL 178


>Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical
           protein T28B8.5 protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +1

Query: 79  HETRDGDVVKGVYSLHEADGTIRTVKYAADKHSGFNAEVHREGHAKHVVPEHQHGH 246
           H++R  ++ +    + +A   +  V     KH   NAE++    A  +VP   H +
Sbjct: 471 HKSRRAEIEQLEMDIKKAKDDVDQVAEKRKKHQKANAELYEMDTAHDIVPPKPHSN 526


>Z68217-6|CAE17833.1|  198|Caenorhabditis elegans Hypothetical
           protein F58G6.8 protein.
          Length = 198

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 249 LMSMLMFRHYMFGVTFTV-HFSV 184
           L+S  +F H++FG  F + HFSV
Sbjct: 11  LLSFTLFSHFIFGNPFLILHFSV 33


>U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory
           abnormality protein10 protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 103 PRHRHGSRAGTCCRRCEDPLLCTRK 29
           P HR      T C+ C++  LC++K
Sbjct: 284 PCHRKEQWTNTTCQTCDEHYLCSKK 308


>L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degenerin
           protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 103 PRHRHGSRAGTCCRRCEDPLLCTRK 29
           P HR      T C+ C++  LC++K
Sbjct: 284 PCHRKEQWTNTTCQTCDEHYLCSKK 308


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 54  SHRRQQVPARDP*R*RGEGCVQSARGRWYHQDC*IRGRQTLRIQR*SAP 200
           SHR++    RD  R RG+     +R R Y  D   R R   R +R S P
Sbjct: 141 SHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPP 189


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 54  SHRRQQVPARDP*R*RGEGCVQSARGRWYHQDC*IRGRQTLRIQR*SAP 200
           SHR++    RD  R RG+     +R R Y  D   R R   R +R S P
Sbjct: 267 SHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPP 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,644,012
Number of Sequences: 27780
Number of extensions: 147552
Number of successful extensions: 423
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)