Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30896
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.36 
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    24   0.63 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   4.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 121 LHEADGTIRTVKYAADKHSGFNAEVH 198
           L E DGT    +   DK SGF+  VH
Sbjct: 57  LAEFDGTTVLCRVCGDKASGFHYGVH 82


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 127 EADGTIRTVKYAADKHSGFNAEVH 198
           E DGT    +   DK SGF+  VH
Sbjct: 1   EFDGTTVLCRVCGDKASGFHYGVH 24


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -2

Query: 139 YHRPRADCTH 110
           YH P  DC H
Sbjct: 329 YHTPEPDCIH 338


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/15 (46%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
 Frame = +1

Query: 205 GHAK-HVVPEHQHGH 246
           GH+  H  P H H H
Sbjct: 422 GHSHIHATPHHHHSH 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,750
Number of Sequences: 438
Number of extensions: 2049
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)