Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30896
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   1.6  
At1g48740.1 68414.m05454 expressed protein                             27   5.0  
At1g22690.1 68414.m02835 gibberellin-responsive protein, putativ...    27   5.0  
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    26   6.6  
At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2 (PL...    26   8.7  

>At3g18210.1 68416.m02316 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 394

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 100 RHRHGSRAGTCCRRCEDPLLC 38
           RHRHG+RA TC  R    L C
Sbjct: 325 RHRHGARATTCGHRVNMLLWC 345


>At1g48740.1 68414.m05454 expressed protein
          Length = 393

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -2

Query: 136 HRPRADCTHPSPRHRHGSRAGT-CCRRCEDPLLCTRKRI 23
           H P     H   RHRHG RA T  C R  + +LC R  +
Sbjct: 311 HSPGQAILHRG-RHRHGPRANTPSCSRA-NMILCCRNSL 347


>At1g22690.1 68414.m02835 gibberellin-responsive protein, putative
           similar to SP|P46688 Gibberellin-regulated protein 2
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 119

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 142 WYHRPRADCTHPSPRH-RHGSRAGTCCRRC 56
           ++HRPR +C H   R     SR   C R C
Sbjct: 53  YHHRPRINCGHACARRCSKTSRKKVCHRAC 82


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
          similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
          [Arabidopsis thaliana]
          Length = 541

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 91 HGSRAGTCCRRCEDPLLCTRKR 26
          H   + + CR CE+P++ T +R
Sbjct: 27 HAMTSPSICRSCEEPIISTEER 48


>At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2
           (PLDBETA2) / PLDdelta1 identical to SP|O23078
           Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD
           beta 2) (PLDdelta1) [Arabidopsis thaliana]; contains
           Pfam profiles: PF00614 phospholipase D.active site
           motif, PF00168 C2 domain
          Length = 927

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 139 YHRPRADCTHPSPRHRHGS 83
           Y  PR +  +P+P H HGS
Sbjct: 13  YRPPRPNPPYPAPPHHHGS 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,093,201
Number of Sequences: 28952
Number of extensions: 131627
Number of successful extensions: 292
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)