Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30895
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    58   2e-09
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.40 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   1.2  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   3.8  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   6.6  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   6.6  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +1

Query: 256 YGASRE-RNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILR 432
           Y A R  R     + F++  DLS L++WN K + +YL A Y T  +E NQVV+WDKI+  
Sbjct: 58  YHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSS 117

Query: 433 GENAVLDFKN 462
            E + +  K+
Sbjct: 118 PEESKMFMKD 127


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 528 TLSWNIIP--NAGLLTQHPGSWSTLLQVSYRIYFKQEYDLRNSRISAAWPT 674
           TL+W ++   NA  L +H G W  L +          Y L+NS IS+   T
Sbjct: 212 TLTWKLVGFNNANALGEHIGLWRKLKKFISHTVADMSYCLKNSGISSGLAT 262


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 483 LGRWQRLKSHSNVTLTLSWNIIPNAGLLTQHPGS 584
           LG+  RL+ +SNV +  +   +  +G +  HPG+
Sbjct: 10  LGQCHRLEDYSNVAINYTGPYLTPSGTMAYHPGN 43


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 447 ARLQEHEH*VLFLGRWQRLKSHSN 518
           AR+QE+ H V F   +  +KSHSN
Sbjct: 271 ARMQEYWHTVQFENNYTDVKSHSN 294


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 260 EHLGNEMILAS*LSILKQICPISLTGTLNSCSYISLPNTLHQ 385
           E LGN+ I A+   ++K++C  S   T N C  +S  + + Q
Sbjct: 171 EKLGNKSIEANRSPLIKELCE-SANSTENVCFSVSTVDEIQQ 211


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 436 ENAVLDFKNMNTKYYFWDDGNGLKVTAMS 522
           + A+L +K    K YF D+GN +   AM+
Sbjct: 584 KKAMLKYKKSADKVYFDDEGNAIPFYAMN 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,836
Number of Sequences: 5004
Number of extensions: 60169
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)