Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30895
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0238 - 21791139-21791264,21791862-21791948,21792713-217927...    76   3e-14
01_01_0202 + 1753394-1753667,1753934-1753977,1754105-1754152,175...    70   2e-12

>09_06_0238 -
           21791139-21791264,21791862-21791948,21792713-21792766,
           21793199-21793261,21793363-21793410,21793626-21793688
          Length = 146

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 38/77 (49%), Positives = 48/77 (62%)
 Frame = +1

Query: 277 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 456
           ND   +T ++  DLS+LF WN KQ+F+++ AEY TP N LNQV LWD II   E+A    
Sbjct: 35  NDEVSMTLNISADLSSLFTWNTKQVFVFVAAEYETPQNALNQVSLWDGIIPSKEHAKFLI 94

Query: 457 KNMNTKYYFWDDGNGLK 507
              N KY F D G+ LK
Sbjct: 95  HTTN-KYRFIDQGSNLK 110


>01_01_0202 +
           1753394-1753667,1753934-1753977,1754105-1754152,
           1754940-1755002,1755460-1755513,1756073-1756159,
           1756253-1756381
          Length = 232

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
 Frame = +1

Query: 277 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 456
           ND   LTF+L  +L +LF W+ KQ+F++LTAEY    N LNQV LWD II   + A L  
Sbjct: 120 NDKVTLTFNLSANLESLFTWSTKQVFVFLTAEYENSKNSLNQVSLWDHIIPDKDKANLQV 179

Query: 457 KNMNTKYYFWDDGN---GLKVTAMSH*H 531
           + + +KY   D G+   G KV  + H H
Sbjct: 180 E-VKSKYPLIDQGSSLRGKKVQLVLHWH 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,393
Number of Sequences: 37544
Number of extensions: 337850
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)