Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30895
         (749 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047290-1|AAH47290.1|  180|Homo sapiens signal peptidase comple...   134   3e-31
AY359044-1|AAQ89403.1|  180|Homo sapiens signal peptidase protein.    134   3e-31
AK026302-1|BAB15437.1|  180|Homo sapiens protein ( Homo sapiens ...   134   3e-31

>BC047290-1|AAH47290.1|  180|Homo sapiens signal peptidase complex
           subunit 3 homolog (S. cerevisiae) protein.
          Length = 180

 Score =  134 bits (324), Expect = 3e-31
 Identities = 66/122 (54%), Positives = 80/122 (65%)
 Frame = +1

Query: 268 RERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAV 447
           RER+DLGF+TFD+  DL N+F+WNVKQLFLYL+AEY T +N LNQVVLWDKI+LRG+N  
Sbjct: 58  RERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPK 117

Query: 448 LDFKNMNTKYYFWDDGNGLKVTAMSH*HYHGILFPMLAC*PNIQALGQHSFKFPIEYTSN 627
           L  K+M TKY+F+DDGNGLK            + P     P +   G  S  FP  Y   
Sbjct: 118 LLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEIT 177

Query: 628 KS 633
           KS
Sbjct: 178 KS 179


>AY359044-1|AAQ89403.1|  180|Homo sapiens signal peptidase protein.
          Length = 180

 Score =  134 bits (324), Expect = 3e-31
 Identities = 66/122 (54%), Positives = 80/122 (65%)
 Frame = +1

Query: 268 RERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAV 447
           RER+DLGF+TFD+  DL N+F+WNVKQLFLYL+AEY T +N LNQVVLWDKI+LRG+N  
Sbjct: 58  RERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPK 117

Query: 448 LDFKNMNTKYYFWDDGNGLKVTAMSH*HYHGILFPMLAC*PNIQALGQHSFKFPIEYTSN 627
           L  K+M TKY+F+DDGNGLK            + P     P +   G  S  FP  Y   
Sbjct: 118 LLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEIT 177

Query: 628 KS 633
           KS
Sbjct: 178 KS 179


>AK026302-1|BAB15437.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22649 fis, clone HSI07332. ).
          Length = 180

 Score =  134 bits (324), Expect = 3e-31
 Identities = 66/122 (54%), Positives = 80/122 (65%)
 Frame = +1

Query: 268 RERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAV 447
           RER+DLGF+TFD+  DL N+F+WNVKQLFLYL+AEY T +N LNQVVLWDKI+LRG+N  
Sbjct: 58  RERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPK 117

Query: 448 LDFKNMNTKYYFWDDGNGLKVTAMSH*HYHGILFPMLAC*PNIQALGQHSFKFPIEYTSN 627
           L  K+M TKY+F+DDGNGLK            + P     P +   G  S  FP  Y   
Sbjct: 118 LLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEIT 177

Query: 628 KS 633
           KS
Sbjct: 178 KS 179


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,659,835
Number of Sequences: 237096
Number of extensions: 2048153
Number of successful extensions: 2702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2699
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)