Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30895
         (749 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070615-1|AAL48086.1|  179|Drosophila melanogaster RE71708p pro...   186   2e-47
AE014297-3505|AAF56264.1|  179|Drosophila melanogaster CG5677-PA...   186   2e-47

>AY070615-1|AAL48086.1|  179|Drosophila melanogaster RE71708p
           protein.
          Length = 179

 Score =  186 bits (454), Expect = 2e-47
 Identities = 83/124 (66%), Positives = 101/124 (81%)
 Frame = +1

Query: 256 YGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRG 435
           YGASRE++DLGF+TFDL+T+L+ +FNWNVKQLFLYLTAEY TP+N+LNQVVLWDKIILRG
Sbjct: 54  YGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRG 113

Query: 436 ENAVLDFKNMNTKYYFWDDGNGLKVTAMSH*HYHGILFPMLAC*PNIQALGQHSFKFPIE 615
           +NAVLDFKNMNTKYYFWDDGNGLK       +    + P     P++QA G+H FKFP +
Sbjct: 114 DNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNIIPNAGLLPSVQATGKHLFKFPAD 173

Query: 616 YTSN 627
           Y ++
Sbjct: 174 YATS 177



 Score = 55.6 bits (128), Expect = 7e-08
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = +2

Query: 98  MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVP 253
           M++VLTRGNA + YTLSV              +DYRT A +NTV+V+VKNVP
Sbjct: 1   MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKNVP 52


>AE014297-3505|AAF56264.1|  179|Drosophila melanogaster CG5677-PA
           protein.
          Length = 179

 Score =  186 bits (454), Expect = 2e-47
 Identities = 83/124 (66%), Positives = 101/124 (81%)
 Frame = +1

Query: 256 YGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRG 435
           YGASRE++DLGF+TFDL+T+L+ +FNWNVKQLFLYLTAEY TP+N+LNQVVLWDKIILRG
Sbjct: 54  YGASREKHDLGFVTFDLQTNLTGIFNWNVKQLFLYLTAEYQTPANQLNQVVLWDKIILRG 113

Query: 436 ENAVLDFKNMNTKYYFWDDGNGLKVTAMSH*HYHGILFPMLAC*PNIQALGQHSFKFPIE 615
           +NAVLDFKNMNTKYYFWDDGNGLK       +    + P     P++QA G+H FKFP +
Sbjct: 114 DNAVLDFKNMNTKYYFWDDGNGLKDNRNVSLYLSWNIIPNAGLLPSVQATGKHLFKFPAD 173

Query: 616 YTSN 627
           Y ++
Sbjct: 174 YATS 177



 Score = 55.6 bits (128), Expect = 7e-08
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = +2

Query: 98  MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVP 253
           M++VLTRGNA + YTLSV              +DYRT A +NTV+V+VKNVP
Sbjct: 1   MHTVLTRGNATVAYTLSVLACLTFSCFLSTVFLDYRTDANINTVRVLVKNVP 52


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,378,053
Number of Sequences: 53049
Number of extensions: 605704
Number of successful extensions: 982
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)