Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30895
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-3|AAA28096.1|  180|Caenorhabditis elegans Hypothetical pr...   101   5e-22

>L14331-3|AAA28096.1|  180|Caenorhabditis elegans Hypothetical
           protein K12H4.4 protein.
          Length = 180

 Score =  101 bits (242), Expect = 5e-22
 Identities = 44/83 (53%), Positives = 57/83 (68%)
 Frame = +1

Query: 256 YGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRG 435
           Y    ++ DL  L F+LK D S +FNWNVKQLF+YL AEY +  NE+NQVVLWD+I+ R 
Sbjct: 54  YATDEQQADLATLNFNLKVDFSKIFNWNVKQLFVYLVAEYKSKVNEVNQVVLWDRIVERA 113

Query: 436 ENAVLDFKNMNTKYYFWDDGNGL 504
           +  V+D   + +KYYF DDG  L
Sbjct: 114 DRVVMDEIGVKSKYYFLDDGTNL 136



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 480 FLGRWQRLKSHSNVTLTLSWNIIPNAGLL 566
           FL     L +H NVT  L +N+IPN+G L
Sbjct: 129 FLDDGTNLLNHKNVTFVLRYNVIPNSGYL 157



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 98  MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNV 250
           M+++L+R NA+L +TL V              +DY    ++    V V+NV
Sbjct: 1   MHNLLSRANALLAFTLWVMAAVTAACFLSTVFLDYTVPTKLTVNDVKVRNV 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,967,774
Number of Sequences: 27780
Number of extensions: 326031
Number of successful extensions: 727
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)