Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30895
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05230.1 68416.m00571 signal peptidase subunit family protein...    77   2e-14
At5g27430.1 68418.m03274 signal peptidase subunit family protein...    70   1e-12
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic...    29   2.5  
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic...    29   2.5  
At3g43800.1 68416.m04681 glutathione S-transferase, putative glu...    29   4.4  
At3g62010.1 68416.m06964 expressed protein                             28   5.8  
At5g62620.1 68418.m07859 galactosyltransferase family protein co...    28   7.6  
At5g52610.1 68418.m06532 F-box family protein contains F-box dom...    28   7.6  

>At3g05230.1 68416.m00571 signal peptidase subunit family protein
           contains Pfam profile:  PF04573 signal peptidase subunit
          Length = 167

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/77 (48%), Positives = 48/77 (62%)
 Frame = +1

Query: 277 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 456
           ND   LT D+  DL +LF WN KQ+F+++ AEY TP N LNQV LWD II   E+A    
Sbjct: 56  NDEVSLTLDISADLQSLFTWNTKQVFVFVAAEYETPKNSLNQVSLWDAIIPAKEHAKFRI 115

Query: 457 KNMNTKYYFWDDGNGLK 507
           + ++ KY F D G  L+
Sbjct: 116 Q-VSNKYRFIDQGQNLR 131


>At5g27430.1 68418.m03274 signal peptidase subunit family protein
           contains Pfam profile:  PF04573 signal peptidase subunit
          Length = 167

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 35/77 (45%), Positives = 47/77 (61%)
 Frame = +1

Query: 277 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 456
           ND   LT ++  DL +LF WN KQ+F ++ AEY T  N LNQV LWD II   E+A   +
Sbjct: 56  NDEVSLTLNITADLQSLFTWNTKQVFAFVAAEYETSKNALNQVSLWDAIIPEKEHAKF-W 114

Query: 457 KNMNTKYYFWDDGNGLK 507
             ++ KY F D G+ L+
Sbjct: 115 IQISNKYRFIDQGHNLR 131


>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 545

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 244 KRTCYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYI 378
           K+  Y A RE +  GF   ++K +   L++WN  Q   YL A+ I
Sbjct: 489 KQPEYSAYRE-SSFGFGILEVKNETHALWSWNRNQDLYYLAADVI 532


>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
           to purple acid phosphatase (PAP13) [Arabidopsis
           thaliana] GI:20257489; contains Pfam profile PF00149:
           Ser/Thr protein phosphatase
          Length = 516

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 244 KRTCYGASRERNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYI 378
           K+  Y A RE +  GF   ++K +   L++WN  Q   YL A+ I
Sbjct: 460 KQPEYSAYRE-SSFGFGILEVKNETHALWSWNRNQDLYYLAADVI 503


>At3g43800.1 68416.m04681 glutathione S-transferase, putative
           glutathione transferase, papaya, PIR:T09781
          Length = 227

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 518 CHINIIMEYYSQCWLVNPTSRLLVNTP 598
           C  NII+EY  + W  + T RLL + P
Sbjct: 67  CESNIIVEYIDEVWKDDKTLRLLPSDP 93


>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 722 LSLNKLGHVTFPYWMRGRP 666
           L    LGHV+F  WMR RP
Sbjct: 370 LQSGSLGHVSFADWMRARP 388


>At5g62620.1 68418.m07859 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 681

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 358 YLTAEYITPSNELNQVVLWDKIILRGE 438
           YLTA Y +P      + LWDK++L G+
Sbjct: 651 YLTAHYQSPRQ---MICLWDKLVLTGK 674


>At5g52610.1 68418.m06532 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 351

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 530 IIMEYYSQCWLVNPTSRLLVNTPSS 604
           I +EY SQ W+ NP +R  V  P S
Sbjct: 98  ICVEYMSQLWISNPATRKGVLVPQS 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,915
Number of Sequences: 28952
Number of extensions: 294273
Number of successful extensions: 535
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)