Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30894
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    52   6e-08
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    29   0.85 
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   2.6  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   4.5  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   4.5  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   4.5  
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun...    26   4.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   7.9  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
 Frame = +2

Query: 2   NPDGYEYTRNSRNNRLWRKTRS--KHANCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGP 175
           N DGYEYT +  N+RLW K R    ++ C+G++ + N+ F +  +G + +PC+ E Y G 
Sbjct: 291 NVDGYEYTWS--NDRLWSKNRQPLNNSECFGINLDANWAFGF--NG-NIDPCSNE-YGGL 344

Query: 176 EPFSEPETQIVRNIMMEN-AKRMKLYVSF 259
            PF   ET  + N++ E+ ++  K  V F
Sbjct: 345 SPFQANETMALFNLITESLSQEQKKVVGF 373



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 256 IHSYGQYLVYPWGYTGDFLPKEWKKLDSLARAVSDAIQRVGGQPFKVMSA 405
           +HSY Q +++P+ YT D  P + +  + LA  +   + RV  + +    A
Sbjct: 376 VHSYSQSVLWPYAYTCDLFPPDTENFEELAIGLVKELHRVNSRYYTYQQA 425


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 417 VPFTSAHYFEGLPSDPLNSV*DGSG*AVKLLP 322
           +PFT+A +F G+P+ P+ +V  G G A  + P
Sbjct: 260 LPFTAAQHFPGMPAMPMMNVPMGPGGAPLVPP 291


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 656 GRFSLQKTIHREIF*SLMLLNFFPEF 579
           G+FSL K   +E   SL LLNFF +F
Sbjct: 479 GKFSLLKYPKKENVISLELLNFFSQF 504


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 277 GTDRKSE*DVELHPFSVLHHNVSDYLRFRL*EGFGAGVSFLVARVVGDS 131
           GT  K + D + H     H NV DY+RF+  +  G  +  L+ R+ G S
Sbjct: 118 GTKTKVDSDEKKHK----HKNVRDYIRFKHVD-IGGRIFDLITRLAGTS 161


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 225 RTLNG*SSTSHSLLRSVPGLPLGLHRRFF 311
           + L G    +H +LRSV   PL  HR FF
Sbjct: 249 KRLQGLPLKAHYVLRSVHPSPLSAHRGFF 277


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 612 LEDFPVYRFLKTESSQYFWLXE 677
           ++ +P Y+F+ +++ QY WL E
Sbjct: 317 MDRYPEYQFVCSQALQYLWLKE 338


>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
           Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 14  YEYTRNSRNNRLWRKTRSKHANCY 85
           Y + +NS N  +WRKT +   N +
Sbjct: 91  YSFIKNSGNEGIWRKTLTLRTNLH 114


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 467 GTPTAPNAKSSLPPAAGYH--LPALITLKGCPPTR*IASETALAKLSSF 327
           GTPTAP   +  P  A  H  + A I+ +    T   A E   A +S++
Sbjct: 61  GTPTAPTVSTGSPAVASLHDQVAAAISPRNRSLTSTSAVEAVPASISAY 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,523
Number of Sequences: 5004
Number of extensions: 62596
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)