Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30894
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    41   0.001
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757...    29   3.6  
09_03_0182 + 13164582-13164860,13164955-13165050                       28   6.2  
04_01_0206 + 2507827-2508705,2508844-2509902                           28   8.3  

>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +2

Query: 77  NCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGPEPFSEPETQIVRNI 217
           N  GVD NRN+   W      Y+P   E   G  PFSEPE QI+R +
Sbjct: 156 NGRGVDLNRNWSVDWGKKEKDYDPY--EENPGTAPFSEPEAQIMREL 200


>01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,
            7572841-7573789,7574573-7575528
          Length = 938

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = +2

Query: 59   TRSKHANCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGPEPFSEPETQIVRNIMMENAKR 238
            +R+  A+C+G   N+ +  K   S  +      E +   EPF EP   + R ++ ++   
Sbjct: 759  SRTSEASCHGSPANQTFVCKPIASTFAEPQLIPEAFT-KEPFQEPALPLSRMLIEDSGSS 817

Query: 239  MKLYVSFTLTVSTWFTPGVTQEIFYRKSG 325
              L   FT  V   F    +     + SG
Sbjct: 818  KDLKNLFTSAVDQPFLARSSNLALMQNSG 846


>09_03_0182 + 13164582-13164860,13164955-13165050
          Length = 124

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 23  TRNSRNNRLWRKTRSKHANCYGVDGNRNYGFKWAVSGVSYNPCNKETY 166
           T+     + WRK  S   +   +DG   Y F++    +SY   NK T+
Sbjct: 68  TKRPLPGKKWRKANSIKES--SLDGKSRYNFRYGQPPISYTQFNKCTF 113


>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 27/125 (21%), Positives = 51/125 (40%)
 Frame = +2

Query: 17  EYTRNSRNNRLWRKTRSKHANCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGPEPFSEPE 196
           E   N+   R+W +   K  + +GVD + +    W ++        K  Y+G +  +  E
Sbjct: 435 ELALNNDKKRIWPELLQKLGDLHGVDFHESI-IIWHIATDLILLERKNNYSG-DSKNAKE 492

Query: 197 TQIVRNIMMENAKRMKLYVSFTLTVSTWFTPGVTQEIFYRKSGRSLTA*PEPSQTLFSGS 376
            + VR+I     + +  Y+ F +       PG+ Q   Y+++  +L    E  +     S
Sbjct: 493 VERVRSI-----RALSNYLMFLVVTRPDMVPGLPQNWLYQQTCNNLDEICEDRRYQLLSS 547

Query: 377 EGNPS 391
            G  S
Sbjct: 548 AGKAS 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,278,914
Number of Sequences: 37544
Number of extensions: 416389
Number of successful extensions: 1017
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)