Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30894
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_62| Best HMM Match : Peptidase_M14 (HMM E-Value=2.7e-34) 90 2e-18
SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 84 1e-16
SB_37943| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 77 1e-14
SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 7e-13
SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_49098| Best HMM Match : Peptidase_M14 (HMM E-Value=4.5e-12) 42 4e-04
SB_26884| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.042
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 29 2.8
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_17356| Best HMM Match : DUF590 (HMM E-Value=0) 28 8.4
>SB_62| Best HMM Match : Peptidase_M14 (HMM E-Value=2.7e-34)
Length = 235
Score = 89.8 bits (213), Expect = 2e-18
Identities = 42/95 (44%), Positives = 52/95 (54%)
Frame = +2
Query: 2 NPDGYEYTRNSRNNRLWRKTRSKHANCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGPEP 181
N DGY YT +NR+WRKTR + CYG D NRN+ FKW G S +PC ++TY GP P
Sbjct: 27 NVDGYVYTHT--HNRMWRKTRKPYGGCYGADPNRNWSFKWGGVGTSSDPC-RDTYRGPRP 83
Query: 182 FSEPETQIVRNIMMENAKRMKLYVSFTLTVSTWFT 286
FSE E V + N K + Y+ W T
Sbjct: 84 FSEVEALNVARYLYRNRKSLIGYMDIHAYSQLWMT 118
>SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 313
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/96 (41%), Positives = 56/96 (58%)
Frame = +2
Query: 2 NPDGYEYTRNSRNNRLWRKTRSKHANCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGPEP 181
N DGYEYTR +R+WRKTR+ C GVD NRN+ +++ V+G S N C+ + Y G +
Sbjct: 120 NVDGYEYTRTK--DRMWRKTRTPGTKCVGVDPNRNFNYRFGVTGTSNNECS-QIYRGKQA 176
Query: 182 FSEPETQIVRNIMMENAKRMKLYVSFTLTVSTWFTP 289
FSE T V + EN R+K Y+ F + +P
Sbjct: 177 FSEKVTYNVAKFLYENRHRLKGYIDFHAYSQMFLSP 212
Score = 31.9 bits (69), Expect = 0.52
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +1
Query: 259 HSYGQYLVYPWGYTGDFLPKEWKKLDSLARAVSDAIQRVGGQPFKVMSAGKW-YPXXXXX 435
H+Y Q + PWGYT D P + + A +A+Q V G + A YP
Sbjct: 203 HAYSQMFLSPWGYT-DAKPSNYTEHMKAMTAAVNALQAVHGTRYVFGPASTTIYPTAGDT 261
Query: 436 XXXXXXXXXVPYSYTMEL 489
+SY +EL
Sbjct: 262 TDWTYGVLGCVHSYCVEL 279
>SB_37943| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 249
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Frame = +2
Query: 2 NPDGYEYTRNSRNNRLWRKTR--SKHANCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGP 175
NPDGY +T + +NRLWRK+R + A C G D NRN+G++W G S PC+ Y G
Sbjct: 122 NPDGYVFTHKNESNRLWRKSRKPTSKAGCIGADLNRNFGYQWGKPGSSDKPCS-FIYRGE 180
Query: 176 EPFSEPETQIVRNIMMENAKRMKLYVSFTLTVSTWFTP-GVTQE 304
P+SE E + + + + A +K Y+ W P G T +
Sbjct: 181 APYSEVEVKNMAAFLWKLAPNLKGYLDIHSYGQLWMYPWGYTNQ 224
>SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 71.3 bits (167), Expect = 7e-13
Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Frame = +2
Query: 2 NPDGYEYTRNSRNNRLWRKTRSKHAN-------CYGVDGNRNYGFKWAVSGVSYNPCNKE 160
N DGY YT NR+WRKTR + CYG D NRN+G+KW + G S NPC+ +
Sbjct: 190 NADGYVYTWTG--NRMWRKTRKPNIQSWWGQKTCYGTDPNRNWGYKWGLPGASSNPCS-D 246
Query: 161 TYAGPEPFSEPETQIVRNIMMENAKRMKLYVSFTLTVSTWFTP 289
T+ G SE E V + R+K Y+ W P
Sbjct: 247 TFRGKTAQSEVEVDNVAKFLKGLGPRVKGYMDIHAYSQFWMIP 289
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 256 IHSYGQYLVYPWGYTGDFLPKEWKKLDSLARAVSDAIQRVGGQPFKVMSAGK-WYPXXXX 432
IH+Y Q+ + PWGYT K+ K+L +++ DAI++ G ++ S+ Y
Sbjct: 279 IHAYSQFWMIPWGYT-TANAKDHKELMRVSKIGVDAIRQTYGTAYRYGSSSNIIYKNSGS 337
Query: 433 XXXXXXXXXXVPYSYTMELTD 495
+ YS+ +EL D
Sbjct: 338 SKDYTYGHLNIKYSFALELRD 358
>SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 69.3 bits (162), Expect = 3e-12
Identities = 39/103 (37%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +2
Query: 2 NPDGYEYTRNSRNNRLWRKTRSKHAN--CYGVDGNRNYGFKWAVSGVSYNPCNKETYAGP 175
NPDGY +T + R WRKT ++ C G D NRN+ +KW G S +PC + Y GP
Sbjct: 62 NPDGYVFTWERQ--RFWRKTLKPNSGTFCVGTDPNRNWDYKWGAEGASTDPC-ADDYRGP 118
Query: 176 EPFSEPETQIVRNIMMENAKRMKLYVSFTLTVSTWFTP-GVTQ 301
FSE E V + + R+K Y+ W P G TQ
Sbjct: 119 HAFSEIEIVNVAKYLKKLGDRIKGYMDIHAYSQFWMIPWGHTQ 161
>SB_49098| Best HMM Match : Peptidase_M14 (HMM E-Value=4.5e-12)
Length = 290
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +2
Query: 146 PCNKETYAGPEPFSEPETQIVRNIMMENAKRMKLYVSFTLTVSTWFTP-GVTQEI--FYR 316
PC+ Y G PFSE ET+ V + + KR++ YV F W +P G T++ YR
Sbjct: 9 PCSP-IYPGSRPFSEVETRNVARYLYKKRKRLRAYVDFHSYGQLWMSPWGFTKKFPPNYR 67
Query: 317 KSGRSLTA 340
+ R++ A
Sbjct: 68 RHARAMNA 75
>SB_26884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 35.5 bits (78), Expect = 0.042
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -2
Query: 583 NLIPHYSENLHK-IEAEPFSAAVQGIEFIARRSIPLCRSKELRQL-QMQSRRFLLQP 419
N I H++E L+K IEAE S A + + R+S+ LCR QL Q+ R F L+P
Sbjct: 43 NHIRHFAEQLYKLIEAELRSLAQGQLGYRKRKSLNLCRDMLESQLGQLLKRTFELEP 99
>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 1258
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 2 NPDGYEYTRNSRNNRLWRKTRSKHANCYGVDGNRNY 109
NPDGYE N + W RS N VD NRN+
Sbjct: 737 NPDGYELAFKGDNRKNWIIGRSNSKN---VDLNRNF 769
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 152 NKETYAGPEPFSEPETQIVRNI-MMENAKRMKLYV 253
NKET G E F+EPE + + + + E K +LYV
Sbjct: 2477 NKETPQGYESFAEPENEDGKELYIQEGQKGTELYV 2511
>SB_17356| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 982
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 83 YGVDGNRNYGFKWAVSGVSYNPCNKETYAGPE 178
+ ++G NY WA + PC + + PE
Sbjct: 872 FSLEGYTNYTLAWAPRNTTLKPCRYQEFRDPE 903
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,183,657
Number of Sequences: 59808
Number of extensions: 479959
Number of successful extensions: 1130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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