Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30894
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.92 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.9  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.6  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -1

Query: 152 CTGCRRLH*PPI*SRSCGYRPRHSSWHVSILFYATNDCFYCFL--CIHI 12
           C GC+      I  +   YRP   +   SIL    N C YC L  CI +
Sbjct: 84  CEGCKGFFRRSI-QQKIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAV 131


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 110 RSCGYRPRHSSWHVSILFYATNDC 39
           R  G+R RHS+ H+S   Y+   C
Sbjct: 189 RVLGHRQRHSTIHLSTGNYSRLAC 212


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 173 PEPFSEPETQIVRNIMMENAKR 238
           P+P    E   +RNI+++N K+
Sbjct: 192 PQPIESFEAAGLRNIVLDNIKK 213


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -1

Query: 98  YRPRHSSWHVSILFYATNDCFYCFL--CIHI 12
           YRP   +   SIL    N C YC L  CI +
Sbjct: 52  YRPCTKNQQCSILRINRNRCQYCRLKKCIAV 82


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +2

Query: 155 KETYAGPEPFSEPETQIVRNIMMENAKRMKLYVSFTLTVSTW 280
           KE   G     + E     N   ++ KR+ LYV   L  + W
Sbjct: 52  KEIVIGGFEIEKSEDDSFNNQADKSEKRIPLYVCRVLHTTVW 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,269
Number of Sequences: 438
Number of extensions: 4529
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)