Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30894
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42320.1 68418.m05150 zinc carboxypeptidase family protein co...    46   2e-05
At1g77850.1 68414.m09072 transcriptional factor B3 family protei...    29   3.0  
At3g20570.1 68416.m02604 plastocyanin-like domain-containing pro...    27   9.1  

>At5g42320.1 68418.m05150 zinc carboxypeptidase family protein
           contains Pfam domain, PF00246: Zinc carboxypeptidase
          Length = 461

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 23/47 (48%), Positives = 27/47 (57%)
 Frame = +2

Query: 77  NCYGVDGNRNYGFKWAVSGVSYNPCNKETYAGPEPFSEPETQIVRNI 217
           N  GVD NRN+G  W      Y+P   E   G  PFSEPETQI+R +
Sbjct: 204 NGRGVDLNRNWGVDWGKKEKDYDP--SEENPGTAPFSEPETQIMRKL 248


>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
           similar to auxin response factor 10 GI:6165644 from
           [Arabidopsis thaliana]; contains Pfam profile PF02362:
           B3 DNA binding domain
          Length = 585

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 281 FTPGVTQEIFYRKSGRSLTA*PEPSQTLFSGS 376
           F  G   EI Y +SG S  A P+PS ++FS S
Sbjct: 404 FLSGDDGEILYPQSGLSSAAAPDPSPSMFSYS 435


>At3g20570.1 68416.m02604 plastocyanin-like domain-containing
           protein
          Length = 203

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 117 NGRSVESPTTRATRKLTPAPNPSQS 191
           +G S  SP    T ++TPAP P+ S
Sbjct: 150 SGESAPSPPVSGTFEMTPAPTPTTS 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,539,289
Number of Sequences: 28952
Number of extensions: 330951
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)