Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30893
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 46 7e-06
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 43 5e-05
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 42 8e-05
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 39 7e-04
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 38 0.001
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 38 0.001
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 38 0.002
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 33 0.037
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 32 0.065
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 30 0.26
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 29 0.61
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 27 1.8
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 4.3
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 26 5.6
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 25 7.5
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 9.9
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 45.6 bits (103), Expect = 7e-06
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +3
Query: 249 P*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT 371
P Y SK+ ++ FT+ +A EVA KG+RVNA++PG + T
Sbjct: 146 PGTSVYAASKAGLESFTKVLAAEVASKGIRVNAISPGYVDT 186
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 76 AGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGN-----IVNVSSVTGL 240
AGVL+S TS + D I+ TN+ L+ +AI + K + I+N+SS
Sbjct: 83 AGVLQSSLCVRTSEKEIDSIICTNLVSAIKLSKMAILEWFRNKNSERDRLILNISSRLST 142
Query: 241 RSFP 252
+ P
Sbjct: 143 YALP 146
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 42.7 bits (96), Expect = 5e-05
Identities = 32/86 (37%), Positives = 46/86 (53%)
Frame = +3
Query: 249 P*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFL 428
P +L Y +K AI FTR ++ + A G+RVNAV PG I T L + +E+ +
Sbjct: 187 PDLLDYTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTPL---VSSTFPKEKIE--- 240
Query: 429 AKCAETHALGRPGDAKEVSSVIVFLA 506
++ LGR G EV+S +FLA
Sbjct: 241 --LSDQVPLGRMGQPVEVASCYLFLA 264
Score = 29.9 bits (64), Expect = 0.35
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 97 TIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSV 231
+IE Q+D TN+ +++T AI H+ K+ +IVN SS+
Sbjct: 137 SIEDIDDEQWDLTFKTNIFSFFWVTKAAISHM-KSGSSIVNCSSI 180
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 41.9 bits (94), Expect = 8e-05
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 73 NAGVLES-GTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVTGLRSF 249
NAGVLE I + ++ ++ + N AIPHL KTKG IV VSS +R F
Sbjct: 85 NAGVLEPIAKIADADINEWRKLFDINFFSVVETVKYAIPHLRKTKGTIVIVSSGAAVRVF 144
Query: 250 P 252
P
Sbjct: 145 P 145
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +3
Query: 243 IFP*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEE 410
+FP AYC SK+AI+ + E + AV PGV+ T + N+E
Sbjct: 143 VFPAWAAYCCSKAAINMLVMNLGSEE--PDIMSVAVRPGVVDTPMQVSIRNDSNKE 196
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIK--TKGNIVNVSSVTG 237
NNAG+ + E S +D ++ +RG Y IPH+ K G+IVN+ SV G
Sbjct: 79 NNAGLADDTPFEQLSHESWDHDVSLVLRGNYLTQRYVIPHMAKQGKGGSIVNIGSVNG 136
Score = 31.9 bits (69), Expect = 0.086
Identities = 19/82 (23%), Positives = 40/82 (48%)
Frame = +3
Query: 261 AYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFLAKCA 440
AY +K+ ++ T+ +A+ G+RVN PG I + + +++ +
Sbjct: 144 AYSAAKAGLENLTKALAVRYGPLGIRVNVCAPGTIWSPAWDE-----RFKKHPDVGDRMK 198
Query: 441 ETHALGRPGDAKEVSSVIVFLA 506
+ +GR G ++V+ ++FLA
Sbjct: 199 RWYPVGRLGTPEDVARAVIFLA 220
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTK--GNIVNVSSVTGLR 243
NNAG +E+T+ Q I NTNV G + + AI + +++ G I+NVSS+ G
Sbjct: 48 NNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV-IKAITPIFRSQHNGMIINVSSIGGKM 106
Query: 244 SFP 252
+FP
Sbjct: 107 TFP 109
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +3
Query: 246 FP*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAF 425
FP Y +K AI+ + + E+ GV+V + PG AT + + +Y
Sbjct: 108 FPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNL 167
Query: 426 LAKCAE 443
K E
Sbjct: 168 KQKLYE 173
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTK--GNIVNVSSVTGLR 243
NNAG +E+T+ Q I NTNV G + + AI + +++ G I+NVSS+ G
Sbjct: 48 NNAGYSVYSPLESTTEEQIHNIFNTNVFGALEV-IKAITPIFRSQHNGMIINVSSIGGKM 106
Query: 244 SFP 252
+FP
Sbjct: 107 TFP 109
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +3
Query: 246 FP*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAF 425
FP Y +K AI+ + + E+ GV+V + PG AT + + +Y
Sbjct: 108 FPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNL 167
Query: 426 LAKCAE 443
K E
Sbjct: 168 KQKLYE 173
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/41 (41%), Positives = 28/41 (68%)
Frame = +3
Query: 255 VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGL 377
+ AYC SK+A+ Q + +A+E A + R+N+V+PG AT +
Sbjct: 169 IAAYCASKAAVRQLCKALAVEWA-EFARINSVSPGYFATDM 208
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 33.1 bits (72), Expect = 0.037
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 264 YCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT 371
YC +KSA+ QFT + E +R+ V+PG++ T
Sbjct: 158 YCSTKSALAQFTSALRKETIDTRIRIMEVDPGLVET 193
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 32.3 bits (70), Expect = 0.065
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKT--KGNIVNVSSVTGLR 243
NNAG G E+ ++ + R MN N G Y+T A+ + ++ G I+ +SSV G
Sbjct: 81 NNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYITKEALNLMRESGKGGRILQISSVAGYY 140
Query: 244 SFP 252
P
Sbjct: 141 PSP 143
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 30.3 bits (65), Expect = 0.26
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 637 DIIKECLHSFKV---YFHCISFLSRTHGMTTSIYRQSGTSNVACSILAKKTMTEDTSLAS 467
D I++C+ F+ + ISFL++ H + + S N+ CS+L + + E S
Sbjct: 18 DAIRKCIALFQTVEQWPDYISFLTKLHKV---LQTHSSFVNIPCSLLVSRALAE---CLS 71
Query: 466 PGLP 455
PGLP
Sbjct: 72 PGLP 75
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 29.1 bits (62), Expect = 0.61
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 261 AYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGL 377
+Y +K+A+ R +A+E A RVN+V+PG I T L
Sbjct: 162 SYHATKAAVKHLARALAVEWA-PFARVNSVSPGYIDTDL 199
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 598 FHCISFLSRTHGMTTSIYRQSGTSNVACSILAKKTMTEDTSLASP-GLPRAWVSA 437
F C+ F + ++ S+ +QSG N+ C I + T+L++P + W+ A
Sbjct: 23 FTCL-FCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDA 76
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 109 LFLWYQIPKHQHY-YKHIPLMDSYPTS 32
+FL + + H ++ YK +PLMD+ P S
Sbjct: 661 VFLGFTVACHLYFKYKFLPLMDAVPIS 687
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 136 LFYRIEPKMLFLWYQIPKHQHYYKHIPLMDSYPTSFFWN 20
LFYR+ + + Y P+H H KH + Y + N
Sbjct: 294 LFYRMSIAEMVVPYGNPEHPHQRKHAFDLGEYGAGYLTN 332
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 88 ESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNV 222
+S TI+ + +D +++ V+ PY++T + HL+ N+ +V
Sbjct: 282 DSSTIDDQAKLLFDYVVSQVVKYPYFVTDIYQIHLLGVYLNLKHV 326
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 667 ALRVYSPLHLDIIK-ECLHSFKVYF 596
A+R ++ L + K ECLH FK +F
Sbjct: 304 AIRAFNILDKETAKYECLHRFKAFF 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,975
Number of Sequences: 5004
Number of extensions: 56696
Number of successful extensions: 153
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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