Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30893
(669 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34) 56 3e-08
SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_13156| Best HMM Match : adh_short (HMM E-Value=0.00022) 48 5e-06
SB_15626| Best HMM Match : adh_short (HMM E-Value=3.8e-05) 44 1e-04
SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45) 44 1e-04
SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34) 38 0.001
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 40 0.002
SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_5208| Best HMM Match : adh_short (HMM E-Value=1.1e-05) 40 0.002
SB_58583| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08) 39 0.004
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 38 0.006
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15) 38 0.007
SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10) 37 0.013
SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_39007| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 33 0.21
SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07) 32 0.37
SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_7777| Best HMM Match : adh_short (HMM E-Value=0.083) 32 0.49
SB_6559| Best HMM Match : adh_short (HMM E-Value=4.3) 31 0.64
SB_28773| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_43204| Best HMM Match : DnaB (HMM E-Value=2.8) 29 3.4
SB_34916| Best HMM Match : adh_short (HMM E-Value=4.8e-06) 29 3.4
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 28 6.0
>SB_23903| Best HMM Match : adh_short (HMM E-Value=7.3e-34)
Length = 253
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/81 (41%), Positives = 47/81 (58%)
Frame = +3
Query: 264 YCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFLAKCAE 443
Y K AID T +A EVA G+RVNAV PGVI T +H G G +A+ ++
Sbjct: 162 YAAVKGAIDSMTLGLAKEVAADGIRVNAVRPGVIETEIHASG-GEPER------VARVSQ 214
Query: 444 THALGRPGDAKEVSSVIVFLA 506
+ +GR G A+EV+ I++LA
Sbjct: 215 SVPMGRGGLAREVAEAILWLA 235
>SB_15764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 51.6 bits (118), Expect = 6e-07
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +3
Query: 261 AYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT-GLHKKGEGSMNEEQYQA-FLAK 434
AY SK+A+ FT+ +A + KG+RVNAV PG I T L + + + + ++ A FLA+
Sbjct: 156 AYGTSKAAVIGFTKAIAADYITKGIRVNAVCPGTIYTESLQYRIDSTPDPQKALADFLAR 215
Query: 435 CAETHALGRPGDAKEVSSVIVFLA 506
GR G +EV++V+VFLA
Sbjct: 216 ----QPTGRFGKPEEVANVVVFLA 235
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKT-KGNIVNVSSV 231
N AG++ G IE S Q+D M+ NV+ + +T IP + + G+I+N++SV
Sbjct: 90 NCAGLVLGGNIEECSEKQWDLTMDLNVKSMFRMTKECIPKMRQQGSGSIINMASV 144
>SB_13156| Best HMM Match : adh_short (HMM E-Value=0.00022)
Length = 233
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVTGLRSF 249
NNAGV G +E ++ +Y +I N+ G +T +P L + KG +VN+SSV G+
Sbjct: 43 NNAGVFIPGPVEWMTVEEYKQIAEVNLWGTVRMTKAFLPLLKREKGRVVNISSVAGMVPL 102
Query: 250 PKS 258
+S
Sbjct: 103 QRS 105
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 261 AYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT 371
AYCISK + F+ + E++ GV V V PG T
Sbjct: 107 AYCISKFGVSVFSDALRREMSPWGVGVVLVEPGAFKT 143
>SB_15626| Best HMM Match : adh_short (HMM E-Value=3.8e-05)
Length = 426
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVT 234
NNAG L+ G IE L+ Y + + N+ G +T +P + + G +VNVSS+T
Sbjct: 138 NNAGTLDVGPIEWLPLSSYKHVADVNLWGMIDVTKAFLPLVQQAHGRVVNVSSIT 192
>SB_26576| Best HMM Match : LMWPc (HMM E-Value=5.60519e-45)
Length = 620
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/81 (33%), Positives = 43/81 (53%)
Frame = +3
Query: 264 YCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFLAKCAE 443
Y SK+ ++ T+ A+E+A G+R NA+ PG I T + +K + EQ + F+
Sbjct: 421 YAASKAGVEGLTKVCAIELARFGIRCNAILPGFIDTPMTRKVPAHIT-EQIKHFI----- 474
Query: 444 THALGRPGDAKEVSSVIVFLA 506
LGR G ++ V+ FLA
Sbjct: 475 --PLGRFGQPSNIADVVSFLA 493
>SB_26063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLI-KTKGNIVNVSSVTGLRS 246
NNAGV G +ET +++ + N N G LT IP + G+I+N+ S+ G+R
Sbjct: 283 NNAGVGLIGVLETHTMSLVREMFNVNFFGVVRLTKAVIPKMKGNPSGHIINIPSIGGIRG 342
Query: 247 FP 252
P
Sbjct: 343 VP 344
>SB_39030| Best HMM Match : adh_short (HMM E-Value=5.5e-34)
Length = 527
Score = 38.3 bits (85), Expect(2) = 0.001
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKT-KGNIVNVSSVTGLRS 246
NNAG+ G +ET + + NTN G ++ IP + G+I+N+SS G
Sbjct: 90 NNAGISHIGMLETQTQSLVKETFNTNFFGVLRMSKAVIPRMKSDHSGHIINISSTAGHTG 149
Query: 247 FP 252
P
Sbjct: 150 MP 151
Score = 21.0 bits (42), Expect(2) = 0.001
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 13 RIYSKKNWLDNYPSMGCACNNA 78
R+Y+ LD S+ AC NA
Sbjct: 32 RVYATMRNLDKKGSLESACQNA 53
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTK-GNIVNVSSVTGL 240
NNAG+L +I S +D + +++G + +T A PH+ K K G I+ +S +G+
Sbjct: 99 NNAGILRDKSILRMSELDWDLVQRVHLKGSFLVTRAAWPHMKKQKFGRIIMTTSTSGI 156
>SB_27289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVTGLRSF 249
NNAG + +E L Y R+ + N+ G +T +P + +G +VNVSS+ G+
Sbjct: 26 NNAGFMTLAPLEWFPLDDYKRMADVNLWGLVDVTKTFLPLVKMARGRVVNVSSIAGIVVV 85
Query: 250 P 252
P
Sbjct: 86 P 86
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 243 IFP*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGL 377
+ P + AY I+K ++ F+ + E++ GVRV + PG T L
Sbjct: 84 VVPSMAAYSITKYGVEAFSDALRREMSPWGVRVIIIEPGGFKTPL 128
>SB_5208| Best HMM Match : adh_short (HMM E-Value=1.1e-05)
Length = 233
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVTG 237
NNAG+L+ G ++ SL + + N+ G +T +P L K KG +VN+ S G
Sbjct: 125 NNAGILQVGPLDWQSLDSIKQTADVNLWGLIDVTKTFLPLLKKAKGRVVNMGSSCG 180
>SB_58583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/81 (35%), Positives = 40/81 (49%)
Frame = +3
Query: 261 AYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFLAKCA 440
AY ISK+ + T+ +A E A G+RVN V PGVI T NE +Q K
Sbjct: 38 AYSISKTTLLGLTKALADECADIGIRVNCVAPGVIKTRF--SAALWKNEAMHQ----KVK 91
Query: 441 ETHALGRPGDAKEVSSVIVFL 503
E + R G ++E+ + FL
Sbjct: 92 ERIPMKRLGTSEEIGGAVSFL 112
>SB_50727| Best HMM Match : adh_short (HMM E-Value=8.9e-08)
Length = 272
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = +3
Query: 264 YCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFLAKCAE 443
YC+SK+ + T+ +A + A VRVN V+PG I G +EE+ A+ +
Sbjct: 164 YCVSKAGLHMCTQALAKDFA-PDVRVNGVSPGFIMV------PGDWSEEKE----AEILK 212
Query: 444 THALGRPGDAKEVSSVIVFLAR 509
LGR G+ +++ +++LA+
Sbjct: 213 NVPLGRQGELADITEAVLYLAQ 234
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/48 (29%), Positives = 32/48 (66%)
Frame = +1
Query: 88 ESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSV 231
ESG+++ + ++++M N+ P++L+ A PHL ++ G+I+N+ +
Sbjct: 108 ESGSVQEET---WNKLMGVNLSFPFFLSQAAFPHLKRSHGSIINMIDI 152
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 258 LAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFLAKC 437
+AY +K AI+ T +A ++A G+RVN ++PG+ T + G +E +A
Sbjct: 443 VAYAATKGAINAMTLPMARDLAKLGIRVNTISPGIFNTPMFMAGR---TKESREAITKSV 499
Query: 438 AETHALGRPGD-AKEVSSVI 494
G+P + A+ V +VI
Sbjct: 500 PFPRRTGKPEEFAQLVQAVI 519
>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
Length = 355
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 37 LDNYPSMGCACNNAGVLESG-TIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTK-GN 210
LD++ + NN+G + G +ET + +++ N LT +PH+I+ K G+
Sbjct: 124 LDHFNKIDILINNSGRSQRGLAVETPGIEVEKAMLDLNFLAVVSLTKAVLPHMIERKNGH 183
Query: 211 IVNVSSVTGLRSFPKS 258
IV SSV G P S
Sbjct: 184 IVVTSSVAGKIGAPMS 199
>SB_3252| Best HMM Match : adh_short (HMM E-Value=4.8e-10)
Length = 289
Score = 37.1 bits (82), Expect = 0.013
Identities = 25/85 (29%), Positives = 42/85 (49%)
Frame = +3
Query: 249 P*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFL 428
P AY +K A+ T+ +ALE+ + VNAV PG IAT ++ + + + +
Sbjct: 184 PDASAYTAAKHALGGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSI- 242
Query: 429 AKCAETHALGRPGDAKEVSSVIVFL 503
L R G E++S++V+L
Sbjct: 243 -------PLRRFGATHEIASLVVWL 260
>SB_9401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 36.7 bits (81), Expect = 0.017
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTK-GNIVNVSSVTGLRS 246
NNAG+ E + +++ NV G +T IPH+ K + G++VN+ SV G+
Sbjct: 121 NNAGIGLFCVPECATTDAINKVFEPNVYGLMRMTNAVIPHMKKQRAGHVVNIGSVLGIVG 180
Query: 247 FPKS 258
P S
Sbjct: 181 TPFS 184
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Frame = +3
Query: 264 YCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEG-------SMNEEQYQA 422
YC SK A++ + +A + ++ + PG +AT + S +EQ QA
Sbjct: 187 YCASKFAVEGYAEAMAPVLGKFNIKTTIIEPGPVATNFASNAKAIRDEVDISGTDEQTQA 246
Query: 423 FLAKCAET---HALGRPGDAKEVSSVIVFLARMLQ 518
L K A T H+L G E + + A +L+
Sbjct: 247 LL-KSALTKMYHSLTNYGQTPEEIAELTKKALLLK 280
>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 35.9 bits (79), Expect = 0.030
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 264 YCISKSAIDQFTRCVALEVALKGVRVNAVNPG 359
Y SK AI T+C+AL++A +RVN+++PG
Sbjct: 201 YSSSKGAIISMTKCMALDLAKDHIRVNSLSPG 232
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = +2
Query: 497 FLS*DAASNITGATLPVDGGRH 562
FL + AS IT A LPVDGGRH
Sbjct: 289 FLCSEDASFITAADLPVDGGRH 310
>SB_39007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 249 P*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGL-HK 383
P + YCISK A++ F+ + LE+ GV+V V PG T + HK
Sbjct: 40 PSIGVYCISKFAVEAFSSALRLELEPWGVKVIVVEPGGYRTEMTHK 85
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 261 AYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGL 377
AY SK I T +A ++A G+RVN + PG+ T L
Sbjct: 173 AYSASKGGIVGMTLPIARDLARNGIRVNTIAPGLFLTPL 211
>SB_32367| Best HMM Match : adh_short (HMM E-Value=1.7e-07)
Length = 384
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/90 (25%), Positives = 41/90 (45%)
Frame = +3
Query: 234 WFEIFP*VLAYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQ 413
+F+ +P + +++ + T +A+E G+R+N V PGVI + E +
Sbjct: 176 FFKGYPNMAHTGAARAGVHNLTMSLAVEWISNGIRINNVAPGVIFS------ETAAANYP 229
Query: 414 YQAFLAKCAETHALGRPGDAKEVSSVIVFL 503
K +T R G+ +EVS + FL
Sbjct: 230 IPDLFEKIRQTLPAKRCGETEEVSGAVCFL 259
>SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 100 IETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVTGL 240
+E L Y R+ + N+ G +T +P + +G +VNVSS+ GL
Sbjct: 6 LEWFPLDDYKRMADVNLWGLVDVTKTFLPLVKMARGRVVNVSSIVGL 52
>SB_7777| Best HMM Match : adh_short (HMM E-Value=0.083)
Length = 133
Score = 31.9 bits (69), Expect = 0.49
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 70 NNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLI-KTKGN-IVNVSSVTGLR 243
NNAG + +DR+ TNVR P ++ ++ K +G IVNVSSV
Sbjct: 32 NNAGFAIFESFLEIKPESFDRMHETNVRAPLFIAQAVAKKMVAKGEGGAIVNVSSVFTEL 91
Query: 244 SFPKS 258
P S
Sbjct: 92 HLPNS 96
>SB_6559| Best HMM Match : adh_short (HMM E-Value=4.3)
Length = 253
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 273 SKSAIDQFTRCVALEVALKGVRVNAVNPG-VIATGLHK--KGEGSMNEEQYQAFLAKCAE 443
+K ++ R A +A +G+ VNAV PG +++ H + G ++ E Q K +
Sbjct: 156 AKGCMELLVRYYAQVLAPRGITVNAVIPGYIMSDAWHNMTRAMGGVSAEPVQ----KRIQ 211
Query: 444 THALGRPGDAKEVSSVIVFL 503
+ + R G+ +E S V+ FL
Sbjct: 212 STPMRRFGEGREFSQVVSFL 231
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +2
Query: 497 FLS*DAASNITGATLPVDGGRH 562
FL AS ITG LPVDGG H
Sbjct: 230 FLCSPRASFITGVALPVDGGLH 251
>SB_28773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 261 AYCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIAT 371
AYCISK + F+ + E++ GV V V PG T
Sbjct: 9 AYCISKFGVSVFSDALRREMSPWGVGVVLVEPGAFKT 45
>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +3
Query: 297 TRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFLAKCAETHALGRPGDAK 476
T+ +A E G+R NA+ PG I T KG S + AF + E GR G+
Sbjct: 2 TKSLAAEWGRYGMRFNAIAPGPIET----KGAFS-RLDPTGAFRSHAIERIPTGRFGEIN 56
Query: 477 EVSSVIVFL 503
E++++ +L
Sbjct: 57 EIANLAAYL 65
>SB_43204| Best HMM Match : DnaB (HMM E-Value=2.8)
Length = 268
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +3
Query: 267 CISKSAIDQFTRCVALEVALKGVRVNAVNPGVI---ATG-LHKKGEGSMNE 407
C+SKSA+ + R +L A K VN GV+ ATG L+ G+GS E
Sbjct: 141 CLSKSAVARAKRRQSLYAASKSPAVNDNRNGVLFQNATGNLNCSGDGSTEE 191
>SB_34916| Best HMM Match : adh_short (HMM E-Value=4.8e-06)
Length = 251
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 273 SKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQ 413
SK A++ T+ +++++ G+ AVNPG + T K + E+
Sbjct: 175 SKCALNMVTKSLSVDLKKDGILAVAVNPGFVKTRKEFKDAAPLTPEE 221
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Frame = +3
Query: 264 YCISKSAIDQFTRCVALEVALKGVRVNAVNPGVIATGLHKKGEGSMNEEQYQAFLAKCAE 443
Y SKSA++ ++ +++++ G+ V ++PG + T + + EE ++ A
Sbjct: 133 YRASKSALNIISKSMSVDLKGDGISVVMLHPGWVQTDMGGPNALTATEESVAGMMSVLAN 192
Query: 444 THALGRPGDAKEVSSVI-VFLARMLQATLLVPLCL*MEVVMPCVLDKKEIQWK*TLNECK 620
+ G + +++ R ++ L CL ++ PC + + T +CK
Sbjct: 193 FDE-SKNGMFIDFRAILGTSFGRPIEEKNLSEECLQPKLTGPCRAYFERWFYNQTSRKCK 251
Query: 621 HSFIISKCNG 650
F+ C G
Sbjct: 252 -QFVYGGCQG 260
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 457 PRAWVSAHFAKKA*YCSSFILPSPFLCKPVAITPGLTAFTRT 332
P+ V+ FA+ A I P + C P + PG A T+T
Sbjct: 2448 PKDCVAGTFAENAMASQCQICPQKYYCVPEKVIPGNVASTKT 2489
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,624,690
Number of Sequences: 59808
Number of extensions: 435818
Number of successful extensions: 970
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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