Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30893
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.86 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.5  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 35  GWITIHQWDVLVIMLVFWNLV 97
           GWI  H+W  +  M+ F NLV
Sbjct: 377 GWICEHRWRQIYNMVRFRNLV 397


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 82  VLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKT--KGNIVNVS 225
           VL+SG +  T      ++   ++     L  + IPH + T  KG +V+++
Sbjct: 142 VLDSGLVNNTQPMCSPKLFAFDLNTSQLLKQVEIPHDVATTGKGELVSLT 191


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 67  CNNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPH 189
           C+   VL+SG +  T      +++  ++     L  + IPH
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLTFDLTTSQLLKQVEIPH 172


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 67  CNNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPH 189
           C+   VL+SG +  T      +++  ++     L  + IPH
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLTFDLTTSQLLKQVEIPH 172


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 67  CNNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPH 189
           C+   VL+SG +  T      +++  ++     L  + IPH
Sbjct: 132 CDRLWVLDSGLVNNTQPMCSPKLLTFDLTTSQLLKQVEIPH 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,598
Number of Sequences: 438
Number of extensions: 4068
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)