Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30891
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   2.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.6  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.9  

>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 498 IHRHLVNPEENILESQPSSA*GSL 427
           ++ HLVNPEE+     PS   GSL
Sbjct: 64  LYSHLVNPEESFSGVSPSDIRGSL 87


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 209 FRLCHWRRFLINDPEERHPWNQVPVC 286
           F +C  +RFL N    RHP+ +V  C
Sbjct: 71  FGVCLMKRFLFNKFFNRHPFTRVKSC 96


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 625 KRFKEFFVSPRRELNGFPIPNNPLH 551
           KR K  F  P   +NG  + N+PLH
Sbjct: 18  KRTKPIFREPNSPVNGGLVYNHPLH 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,496
Number of Sequences: 5004
Number of extensions: 62640
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)