Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30891
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0136 - 992662-992821,992879-993051                               29   4.6  
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551...    28   6.1  
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117...    28   6.1  

>07_01_0136 - 992662-992821,992879-993051
          Length = 110

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 375 RTFILLVIWNKFERIEKRN*KAIRNILMNEHTGT 274
           R  +LL+ W KF  ++  N K + N L N+HT +
Sbjct: 58  RILLLLLQWLKFFNLKHTNSKLLPNPLPNKHTSS 91


>11_01_0676 -
           5511755-5511831,5512857-5513052,5513462-5513577,
           5513752-5514597,5515515-5515766,5522344-5525206
          Length = 1449

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 592 RELNGFPIPNNPLHGPCPGLLMN 524
           R + G  +P+ PLHGP   LL N
Sbjct: 83  RRVTGLSLPHTPLHGPITPLLGN 105


>10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,
            1172998-1173381,1173478-1175253,1175329-1175452,
            1176859-1177027,1177131-1177226,1177339-1177527,
            1177965-1179303
          Length = 1468

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 537  PGQGPWRGLFGIGKPLSSLRGETKNSLNRFPANRG*RLRPPWTIKMVTGPGG 692
            P  G +R L  +G+P    R      + R P +     R PWT+  + G GG
Sbjct: 1320 PRNGSYRNLDDLGRPGDRSRDNLPFGMPRRPNSSNGSRREPWTV--LDGQGG 1369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,886,644
Number of Sequences: 37544
Number of extensions: 424428
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)