Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30891
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z81537-8|CAB04380.1|  343|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U80838-4|AAT48616.1|  648|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical
           protein F35G12.10 protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 640 PRLAGKRFKEFFVSPRRELNGFPIPNNPLHGPCPGLLM 527
           P L     K+F   P R+L  +P P+ P++ P   LLM
Sbjct: 72  PELLPSVPKDFKEHPDRDLTNYPYPSRPMYPPKTRLLM 109


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
           protein Y50D7A.1 protein.
          Length = 791

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 429 LNVHQRLSRKRRPVRNTLRTFILLVIWNKFERIEKRN*KAIRNI 298
           L  H  +  KRR   ++  T+     WN FER EK   K  + I
Sbjct: 527 LKCHLEMEYKRRIDTSSNDTYFFSEFWNFFERFEKFTKKFFKRI 570


>Z81537-8|CAB04380.1|  343|Caenorhabditis elegans Hypothetical
           protein F41D3.9 protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 203 ILFRLCHWRRFLINDPEERHPWNQVPVCSFISIFLMAFQFRFSILSNLFHITKSMN 370
           +++  C+   F IN P ++HP  +V VC   +I   ++ F +    NL  I K  N
Sbjct: 13  VIWSFCY---FFINVPADKHPKQEVCVCK-SAITGKSYNFCYRDPQNLNSIGKKFN 64


>U80838-4|AAT48616.1|  648|Caenorhabditis elegans Hypothetical
           protein F47F6.5 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 233 FLINDPEERHPWNQVPVCSFIS 298
           FL N   + HPWN +PV  ++S
Sbjct: 573 FLNNYNHDGHPWNLLPVTQYVS 594


>L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical
           protein ZK688.2 protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 679 VTILMVHGGLSRYPRLAGKRFKEFFVSPRRELNGFPIPNNPLHG 548
           + ++MV  G  R P L    F +  V P        IPNNPL G
Sbjct: 317 MVLMMVDQGYDRAPDLKRDDFWDEEVEPLYSEETAKIPNNPLKG 360


>Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical
           protein F17B5.3 protein.
          Length = 239

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 458 SRMFSSGFTRWR*IREKRPGRLVH*QTRTGPVEGIIRDWETIKFPSG 598
           S  +SS  +  R  R  +  RL H  +R+ P     RDW T + P G
Sbjct: 38  SSSYSSSSSEERSKRRHKNSRLTH-SSRSRPTRTCPRDWITFERPQG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,968,026
Number of Sequences: 27780
Number of extensions: 359131
Number of successful extensions: 629
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)