Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30891
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.90 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.90 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.90 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 274 SSGMFVH*YIPNGLSIPFFNSFKLIPYYQ 360
           +SG +      NG++ P  N F  +PYY+
Sbjct: 294 NSGFYSTIMYSNGVTFPQRNRFSSLPYYK 322


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 274 SSGMFVH*YIPNGLSIPFFNSFKLIPYYQ 360
           +SG +      NG++ P  N F  +PYY+
Sbjct: 294 NSGFYSTIMYSNGVTFPQRNRFSSLPYYK 322


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 551 VEGIIRDWETIKFPSG 598
           +E I++D ET++FPSG
Sbjct: 346 IEIIVKDPETLQFPSG 361


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 206 LFRLCHWRRFLINDPEERHPWNQV 277
           L  + HW  F     ++R+PW Q+
Sbjct: 222 LRNIVHWTPFFQTYKKQRYPWVQL 245


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 206 LFRLCHWRRFLINDPEERHPWNQV 277
           L  + HW  F     ++R+PW Q+
Sbjct: 137 LRNIVHWTPFFQTYKKQRYPWVQL 160


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 206 LFRLCHWRRFLINDPEERHPWNQV 277
           L  + HW  F     ++R+PW Q+
Sbjct: 456 LRNIVHWTPFFQTYKKQRYPWVQL 479


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 586 LNGFPIPNNPLHGPCPGL 533
           ++G P+P  PLH  C  L
Sbjct: 436 IHGPPLPPLPLHTECEDL 453


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 586 LNGFPIPNNPLHGPCPGL 533
           ++G P+P  PLH  C  L
Sbjct: 436 IHGPPLPPLPLHTECEDL 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,328
Number of Sequences: 438
Number of extensions: 4755
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)