Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30890
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   6.5  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   6.5  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   8.6  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   8.6  

>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 305 FSIFNLSIYKSMTSESILPASFLLALVTSAPSRLAASRCFSGSLDAVNRKTAGAVIT 475
           F IFN+S+  +   ++I+   F      SAP  + A+  F+   D  + K  G  IT
Sbjct: 210 FGIFNISVAVAKDIQTIMMCRFFSGFFASAPLTVVAA-AFA---DMYSNKHRGTAIT 262


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 269 MSSLVYPNAFNPFSI-FNLSIYKSMTSES--ILPASFLLALVTSAP 397
           MSS+   N+FNPF + F+L  Y  +      +L   F+ A+++  P
Sbjct: 1   MSSVETRNSFNPFRVLFDLGSYGWLHPSRLLLLEIPFVFAIISKVP 46


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 344 SESILPASFLLALVTSAPSRLAASRCFSGSLDAVNRKTAGAVI 472
           S S LP+SF + +VT A S   +      ++  V+  T GAVI
Sbjct: 142 STSFLPSSFAMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVI 184


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 305 FSIFNLSIYKSMTSESILPASFLLALVTSAPSRLAASRCFSGSLDAVNRKTAGAVIT 475
           F IFN+S+      ++I+   F      SAP  + A    +   D  + K  G  IT
Sbjct: 211 FGIFNISVAVGKDIQTIMMCRFFAGFFASAPLTVVA----AALADMYSNKYRGTAIT 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,870
Number of Sequences: 5004
Number of extensions: 55370
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)