Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30890
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0708 - 20865786-20867153                                         29   2.9  
06_01_0848 - 6463100-6463293,6463983-6465144                           29   5.1  
06_03_1273 + 28892774-28893946,28894964-28895104,28895277-288953...    28   9.0  
05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181     28   9.0  
01_07_0376 - 43156672-43156902,43157505-43157741,43157934-431582...    28   9.0  
01_05_0268 - 20251413-20251565,20252420-20252674,20252905-202530...    28   9.0  

>07_03_0708 - 20865786-20867153
          Length = 455

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = +1

Query: 574 CTPAFPMPTPAIVAPDACSISLPRLQKLFTERTKILCKGLQTKSRPK 714
           CT  FP PTPA V   A S +  RL           C+ L T SRP+
Sbjct: 122 CTRCFPRPTPAPVLQPARSSTFSRL-----PCNGSFCQYLPTSSRPR 163


>06_01_0848 - 6463100-6463293,6463983-6465144
          Length = 451

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = -3

Query: 486 GLSVVMTAPAVFRFTASSDPEKHLEAASLLGADVTNAKRKDAGRILSDVILLY----MDK 319
           G+S+       F     S P KHLE A +L A+   AK+    R+ ++ ++++     +K
Sbjct: 193 GISIADRPSYAFASRVISRPTKHLEEAVVL-ANEFGAKQ--GTRVFTNAVMIFGILGQEK 249

Query: 318 L-KIENGLKALGYTNDDIPDLVR 253
           L K     K LG++ DD+   VR
Sbjct: 250 LAKKLEFFKKLGWSQDDLSLAVR 272


>06_03_1273 +
           28892774-28893946,28894964-28895104,28895277-28895329,
           28895852-28895966
          Length = 493

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 514 SSGTKLLTFPAIGYASP*HKCTPAFPMPTPAIVAP-DACSISLPRLQKLFTE 666
           SS   L  FP +G  S  H      P PTP   AP  +CS   P +  +F E
Sbjct: 108 SSSDLLPPFPVLGNGSAAHLLRDTPPPPTPRCPAPIKSCSSPAP-VSSVFRE 158


>05_06_0190 - 26260743-26261198,26261261-26261355,26261425-26262181
          Length = 435

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 576 TFMSRASVP-DSWKR*EFCSRGLCSNPIIPHGLSVVMTAPAVFRFTASSDPEKHLEAASL 400
           TF  R  V  D+WK   + S        IP G  +++T+ +      S+DP++H +  S+
Sbjct: 248 TFRDRCDVDEDTWKELYYSSENR-----IPRGSKIIITSRSEVFVFGSADPDEHPKLTSI 302


>01_07_0376 -
           43156672-43156902,43157505-43157741,43157934-43158295,
           43158370-43158670
          Length = 376

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 632 IEHASGATMAGVGIGNAGVHLCHGLAYPIAGNVKSFVPE 516
           + H+S  T  G+  G+ G    H +A     N+K F  E
Sbjct: 67  LSHSSSTTFVGIYDGHGGPETAHFIAQHFFPNLKKFATE 105


>01_05_0268 -
           20251413-20251565,20252420-20252674,20252905-20253055,
           20253161-20253398,20253966-20254067,20254382-20254611,
           20255599-20255724,20256056-20256828
          Length = 675

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +2

Query: 296 FNPFSIFNLSIYKSMTSESILPASFLLALVTSAP---SRLAASRCFSGSLDAVNRKTAGA 466
           F+   I N+   + + +  I+  + +L  +TS P    R  A+  F+G L  +     G 
Sbjct: 123 FSDTDILNMDSVRRLNTSEIVHGALVLMNLTSEPMLPGRSTATANFTGFLKTMLTDVVGQ 182

Query: 467 VITTDRP*GIIGLE 508
           V++T R    I +E
Sbjct: 183 VLSTRRHYAAIRME 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974,592
Number of Sequences: 37544
Number of extensions: 347957
Number of successful extensions: 981
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)