Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30890
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06)                65   5e-11
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)               30   2.3  
SB_13274| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_27973| Best HMM Match : Fe-ADH (HMM E-Value=5.6e-06)
          Length = 324

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 28/38 (73%), Positives = 35/38 (92%)
 Frame = -3

Query: 507 SNPIIPHGLSVVMTAPAVFRFTASSDPEKHLEAASLLG 394
           S+PI+PHGLSVV+TAPAVFRFTA S P++H+EAA L+G
Sbjct: 239 SHPIVPHGLSVVVTAPAVFRFTAPSCPDRHIEAARLMG 276



 Score = 32.3 bits (70), Expect = 0.42
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -1

Query: 566 HGLAYPIAGNVKSFVPEDYVP 504
           HG++YPI+G VKS+  +DY P
Sbjct: 218 HGMSYPISGLVKSYKAKDYDP 238


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 29/97 (29%), Positives = 37/97 (38%)
 Frame = +1

Query: 424 LRVTRCGESENSRRCHYNRQAVRDYRIGT*SSGTKLLTFPAIGYASP*HKCTPAFPMPTP 603
           +R  R G+ E  R     R   R Y I T   GT L   PA              P+P  
Sbjct: 652 MRPFRLGKKEWDRATVCKRLDERSYEIET-DDGTTLRRNPADIRMQQTPSPEDQSPVPAA 710

Query: 604 AIVAPDACSISLPRLQKLFTERTKILCKGLQTKSRPK 714
            +  PD  S+S P      TE+     K  +T +RPK
Sbjct: 711 TVPGPDPSSVSSPAATSA-TEKPPPSDKRPETPARPK 746


>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
          Length = 426

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -1

Query: 710 GRDFVCRPLQSIFVRSVNNFWRRGSEIEHASGATMAGVGIGNAGVHLCHGLAYPIAGNVK 531
           G+ F+    +S+F+R V +F +     +HA   T+A      +G ++C G    I GNV+
Sbjct: 29  GKTFLYTNNKSVFIRDVEDFAKCDVYTDHAKDTTVA--AYAPSGNYICSG---DITGNVR 83


>SB_13274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 570 MSRASVPDSWKR*EFCSRGLCSNPIIP 490
           + R  VPD W R  FC   L  +P+IP
Sbjct: 15  IGRTDVPDKWGRKIFCDTVLSWSPMIP 41


>SB_14710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 196 PLQIVS--LERFLINDPEVKHPDQVRYVVISIS*CLQSVFNLQLIHIQ 333
           PL+I++  L+R ++ D     P   +Y  I  + CL+SVF   + H+Q
Sbjct: 7   PLKILATGLKRKILFDTNATRPGLRKYRKIKAADCLKSVFENTVSHMQ 54


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -1

Query: 740 GQQSPLSECLGRDFVCRPLQSIFVRSVNNFWRRGSEIEHASGATMAGVGIGNAGVHLCH 564
           G+    +EC+G D +C P  ++   +  ++  R        G T A +   + G H CH
Sbjct: 618 GECKDKNECVGSDLLCDP-NALCTNTPGSYLCRCKSGFQGDGKTCADIDECSDGSHDCH 675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,059,389
Number of Sequences: 59808
Number of extensions: 412783
Number of successful extensions: 966
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)