Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30890
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...    68   6e-12
Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = -3

Query: 498 IIPHGLSVVMTAPAVFRFTASSDPEKHLEAASLLGADV-TNAKRKDAGRILSDVILLYMD 322
           +IPHGLSV+ TA A F FT ++ P++HL +A  LGAD+  NA  +   R L D +  YM 
Sbjct: 351 LIPHGLSVMTTAVADFEFTTAACPDRHLISAQTLGADIPNNASNEYISRTLCDRLRGYMR 410

Query: 321 KLKIENGLKALGYTNDDI 268
              + NGLK +G+   DI
Sbjct: 411 DFGVPNGLKGMGFEFSDI 428



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 29/74 (39%), Positives = 45/74 (60%)
 Frame = -1

Query: 731 SPLSECLGRDFVCRPLQSIFVRSVNNFWRRGSEIEHASGATMAGVGIGNAGVHLCHGLAY 552
           +P+S+   ++ + R +   F RS+ +     +  E    ++ AG+G GNAGVHLCHGL+Y
Sbjct: 273 NPISDVWSKEAL-RIIGKYFRRSIFDPTDEEARTEMLKASSFAGIGFGNAGVHLCHGLSY 331

Query: 551 PIAGNVKSFVPEDY 510
           PI+   KS V +DY
Sbjct: 332 PISSQAKSCVADDY 345


>Z75550-2|CAA99928.2|  421|Caenorhabditis elegans Hypothetical
           protein T22C1.3 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 293 AFNPFSIFNLSIYKSMTSESILPASFLLALVTSAPS 400
           AFNP +I +  I      ++ + A  LL+LVT  P+
Sbjct: 144 AFNPITIVSTGILSLTVIQNFVSAVILLSLVTDRPT 179


>U97193-4|AAB52439.1|  691|Caenorhabditis elegans Hypothetical
           protein C06A5.6 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 372 RKDAGRILSDVIL-LYMDKLKIENGLKALGYTNDDIPD 262
           RKD G  L+  I   Y DK+K ++G+ AL Y  DD  D
Sbjct: 223 RKDFGADLNGQINEFYKDKVKRKSGVHALIYKKDDRGD 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,571
Number of Sequences: 27780
Number of extensions: 304383
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)