Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30890
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13520.1 68418.m01561 peptidase M1 family protein similar to ...    31   0.80 
At4g13710.1 68417.m02129 pectate lyase family protein                  29   2.4  
At3g24230.1 68416.m03041 pectate lyase family protein similar to...    29   2.4  
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si...    28   7.5  
At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containi...    28   7.5  
At3g05330.1 68416.m00581 cyclin family low similarity to microtu...    27   9.9  
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta...    27   9.9  

>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
           SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
           hydrolase) {Homo sapiens}; contains Pfam profile
           PF01433: Peptidase family M1
          Length = 616

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = -3

Query: 495 IPHGLSVVMTAPAVFRFTASSDPEKHLEAASL 400
           IP+ LS VM+A  V R  A  +  KHLEA SL
Sbjct: 156 IPNSLSAVMSARHVRRRLAVPEEAKHLEAGSL 187


>At4g13710.1 68417.m02129 pectate lyase family protein
          Length = 470

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = -1

Query: 737 QQSPLSECLGRDFVCRPLQSIFVRSVNNFWRRGSEIEHASGATMAGVGIGNAGVHLCH 564
           Q+ PL     RD V    Q + + S      RGS +  A+GA +    I N  +H  H
Sbjct: 185 QEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLH 242


>At3g24230.1 68416.m03041 pectate lyase family protein similar to
           pectate lyase GP:14531296 from [Fragaria x ananassa]
          Length = 452

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = -1

Query: 737 QQSPLSECLGRDFVCRPLQSIFVRSVNNFWRRGSEIEHASGATMAGVGIGNAGVHLCHGL 558
           Q  PL     RD V +  Q + + S      RG+ +  A+GA +    I N  VH  H  
Sbjct: 167 QVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQNITNVIVHGLHIH 226

Query: 557 AYPIAGNV 534
                GNV
Sbjct: 227 DCKRTGNV 234


>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
           similarity to unusual floral organs (UFO) GI:4376159
           from [Arabidopsis thaliana]
          Length = 403

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 278 LVYPNAFNPFSIFNLSIYKSMTSESILPASFLLALVTSAPSRLAASRCFSGSLDAVN 448
           L +P +FN F +FN ++    T    LP S  L   +S  S      CFS S  +V+
Sbjct: 101 LSHPQSFNSFPLFNPNLISWCTLP--LPRSLSLTCASSLLSSSNGLLCFSLSPSSVS 155


>At4g20770.1 68417.m03016 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 740

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 LSIYKSMTSESILPASFLLALVTSAPSRL 406
           L +YK M  +  LP+ F LA V SA S++
Sbjct: 89  LVVYKRMVCDGFLPSRFTLASVLSACSKV 117


>At3g05330.1 68416.m00581 cyclin family low similarity to
           microtubule-binding protein TANGLED1 [Zea mays]
           GI:11228986; contains Pfam profile PF00134: Cyclin,
           N-terminal domain
          Length = 444

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 588 SDADARHRRARCMLDLASTSPEIVH*TNENTLQGSANKIAPQ 713
           SD+    +RAR  +   + SP++     EN+ +  AN+++P+
Sbjct: 187 SDSPPSLQRARSRIAFRTISPQVKGNNGENSFRHLANRVSPK 228


>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
           putative / EDGP, putative similar to extracellular
           dermal glycoprotein EDGP precursor [Daucus carota]
           GI:285741
          Length = 434

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 290 NAFNPFSIFNLSIYKSMTSESILPAS 367
           ++ NP+++   SIYK+ TSE I  A+
Sbjct: 290 SSVNPYTVLESSIYKAFTSEFIRQAA 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,422
Number of Sequences: 28952
Number of extensions: 282275
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)