Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30889
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   0.87 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   3.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.1  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   8.1  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
 Frame = -1

Query: 463 ARILLTSTYTPGVPCSPQPMPQDT--IPDCQYRFV*FGMGHTSGDPPSPVQGSRPRCPPA 290
           AR + T  +    P S +P+P  T  +P     F    +   S  PP+P    R   P  
Sbjct: 31  ARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQREASPVK 90

Query: 289 HMNDSWSWNSLPAASCGLALAHLVL--DNRHLDLFHDAPVSPFLPEL 155
           ++  S S+ S+   S    +  L L   N    L+     +P  P++
Sbjct: 91  NIEHSESFPSVFGTSNNHQIVPLTLKDGNDFGALYASLNTTPHFPQV 137


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 340 GDPPSPVQGSRPRCPPAHMNDSWSWNSLPAASCGLALAHLV 218
           G P + ++G++   PP+H   +   NS PA++  L   H V
Sbjct: 243 GTPSTSIEGAKTSIPPSHAMQN-PHNSFPASADRLQKNHPV 282


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 384  SGIVSWGIGCGEQGTPGVYVDVSK 455
            SG VSW IGC E     + VD  K
Sbjct: 1328 SGNVSWDIGCDENPANFMIVDSDK 1351


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 260  PPSRVLRTRAGTPGSRQPAPRSFS*CPGVSLPSRTCPCPS 141
            PP  V ++ +G P +  P P   S  P +  PS   P P+
Sbjct: 1050 PP--VPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 7    SGKFLYDAALLFLESPVDLTPNV 75
            +G FL    LLFL++PV L P +
Sbjct: 1618 AGDFLLSHLLLFLQAPVILIPYI 1640


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 398 GHDPGLPVPVRLIRYGAHER 339
           GHD   PVP +L R GA  R
Sbjct: 552 GHDRTKPVPFKLTRLGAKYR 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,408
Number of Sequences: 5004
Number of extensions: 50186
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)