Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30889
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0242 + 19828521-19829252 31 0.51
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 31 0.68
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 30 1.2
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285... 29 2.1
05_05_0131 - 22600220-22600582,22600849-22601234,22601337-226015... 29 2.1
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048... 29 2.7
03_01_0424 - 3253179-3253367,3253480-3253556,3253654-3253739,325... 29 3.6
01_01_0864 + 6732553-6733602 29 3.6
10_08_1026 + 22400551-22401161,22401437-22401632,22401837-224018... 28 4.8
10_07_0017 - 11832733-11832963,11835172-11835550,11836466-11836704 28 4.8
09_02_0377 + 8144839-8145318 28 4.8
05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312... 28 4.8
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995... 28 4.8
06_02_0316 - 14241729-14242049 28 6.3
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 28 6.3
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 28 6.3
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 27 8.3
10_08_0339 + 16922509-16923876,16923941-16924384,16924469-169246... 27 8.3
09_02_0476 + 9728729-9730739,9730930-9730991 27 8.3
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280 27 8.3
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 27 8.3
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 27 8.3
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530... 27 8.3
02_05_0819 - 32014236-32016059 27 8.3
02_04_0592 - 24171698-24172285 27 8.3
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622 27 8.3
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 27 8.3
>01_05_0242 + 19828521-19829252
Length = 243
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 151 GQVREGRETPGHHEKDRGAGCREPGVPARVRKTRLGG 261
G + + PG +DRG G GVPA++R R GG
Sbjct: 60 GALARRKGLPGECRRDRGRGGAGDGVPAKLRAGRGGG 96
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -3
Query: 131 GTWSWQRESPWAAAXQATPTLGVRSTGDSRKSRAASYKNFP 9
G W+W RESP + A Q P TGD R + A + N P
Sbjct: 410 GPWTW-RESPASRAMQKCPACKRTHTGDGRTVKPAHF-NVP 448
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 189 MMPRCLPSFPNLSLPQPVARHLVLAAGESMGGGKXGDAHVGSQING 52
++P LPS N SL P++ + V+ G H GSQI+G
Sbjct: 2542 LLPFVLPSSSNPSLTAPLSLNTVVHRTSGPLNAGAGSQHAGSQISG 2587
>06_03_0729 +
23927656-23927661,23927774-23927923,23928316-23928567,
23929072-23929209,23931213-23932730
Length = 687
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 44 LSRPLI*LPTWASPXLPPPMDSPAAKTKCLATGWGKDKFGKEGRHRGIMKKI 199
L+ P P+ P PPP SPAA +C ++G G G G+++ +
Sbjct: 200 LNPPSSDAPSPPPPSPPPPPPSPAAHRRCSSSGGGGGDDDGYGGGDGMLRSL 251
>05_05_0131 -
22600220-22600582,22600849-22601234,22601337-22601526,
22601636-22601805,22601909-22602053
Length = 417
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 355 MGHTSGDPPSPVQGSRPRCPPAHMNDSWSWNSLPAASCGLALAHLVLDNRHLD 197
+G G+ P+P+ GS C P + + S G+ L L+ R +D
Sbjct: 232 LGQVGGNAPAPMMGSFGCCAPEYDRSGQATMKSDVYSFGVVLVQLISGRRAID 284
>04_04_1498 +
34002677-34003104,34004427-34004532,34004643-34004811,
34004901-34005088,34005644-34005763
Length = 336
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 131 GTWSWQRESPWAAAXQATPTLGVRSTGDSRKSRAASYKNFPDG 3
GT S+Q+ +P A+PT V++ GD+++S + + P G
Sbjct: 113 GTVSFQQPAP-GTGGTASPTAAVQAAGDNKESASKRKRGGPGG 154
>03_01_0424 -
3253179-3253367,3253480-3253556,3253654-3253739,
3253844-3254321,3254393-3254519,3254624-3254740,
3254853-3254966,3256650-3256715,3257738-3258117,
3258217-3258496
Length = 637
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 565 LFIYLLKTKRYVIQILGWLAFVSNPFSAT---FSSIHARILLTSTYTPGV 425
L +YL + + IQ++G+L NP SAT FSS + + L + GV
Sbjct: 266 LLVYLTHAENHGIQVIGYLKKGLNPPSATSLNFSSPYMMLALKTGIITGV 315
>01_01_0864 + 6732553-6733602
Length = 349
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1
Query: 361 FGMGHTSGDPPSPVQGSRPRCPPAHMNDSWSWNSLP 254
+G H G PV G P P + W W SLP
Sbjct: 143 YGSQHAYGS--QPVYGRMPSKPSRAYREDWYWRSLP 176
>10_08_1026 +
22400551-22401161,22401437-22401632,22401837-22401889,
22402369-22402819
Length = 436
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 47 SRPLI*LPTWASPXLPPPMDSPAAKTKCLATGWGKD 154
SRP++ W P +P P + AA WG D
Sbjct: 91 SRPVLVTDEWGEPGVPEPQSTSAADPPTNDDEWGGD 126
>10_07_0017 - 11832733-11832963,11835172-11835550,11836466-11836704
Length = 282
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 130 PRHRLGQGQVREGRETPGHHEKDRGAGCRE 219
P +++G+G R+ R++ G H+ D G RE
Sbjct: 46 PGNKIGKGTRRQRRQSGGKHKIDDDGGARE 75
>09_02_0377 + 8144839-8145318
Length = 159
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 347 VPHTESNEPVLAV----RDRVLGHRLRGAGHPGRVRGRQQDP 460
VP + NE +AV R+R GH G G GR+R + DP
Sbjct: 65 VPLRQLNESAVAVMAEHREREHGHGGGGGGGGGRLRSHRADP 106
>05_01_0395 +
3118480-3119097,3119699-3119989,3120063-3120114,
3120395-3120546
Length = 370
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +2
Query: 65 LPTWASPXLPPPMDSPAAKTKCLATGWGKDKFGKEGRHRGIMKKIEVPVVENQVCQRESA 244
L + SP L PM SP +++ G D G RG+ K E+ N Q ++
Sbjct: 258 LSSLTSPILTTPMSSPTSRSGVGREKVGGDTLGVRDDDRGVEKVEEIKYYNNS-AQNDAP 316
Query: 245 RR 250
R
Sbjct: 317 NR 318
>01_06_0684 +
31196825-31197252,31199189-31199291,31199402-31199512,
31199614-31199697,31199915-31199986,31200073-31200129,
31200427-31200546,31201301-31201324,31201953-31202063,
31202165-31202202,31202287-31202443,31202700-31202801,
31202878-31202934,31203113-31203259,31203429-31203499,
31203582-31203669,31203810-31203866,31203996-31204193
Length = 674
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 428 GALLPAADAPGHDPGLPVPVRLIRYG 351
GA++P + PGH PVR IR+G
Sbjct: 10 GAIVPFSGEPGHAVAAAPPVRNIRHG 35
>06_02_0316 - 14241729-14242049
Length = 106
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 323 RGRGVAAR-VPHTESNEPVLAVRDRVLGHRLRGAGHPGRVRG 445
RGRG + V E + V+ D LG R RGA H GR+RG
Sbjct: 46 RGRGWRRQDVDFMEVDHVVVLCGD--LGQRRRGAWHGGRLRG 85
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 158 TCPCPSRWRGTWSWQRESPW 99
T P S WRG W R+ PW
Sbjct: 84 TLPWWSTWRGRWIHLRDQPW 103
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 WASPXLPPPMDSPAAKTKCLATGWGKDKFGKEGRHRGIMKKIE-VPVVENQVCQRE 238
W P +PPP++ P ++ + K+K G+ R K+ + + +E Q+ E
Sbjct: 258 WQLPWVPPPVEEPPSEEELARKAALKEKAGQRLRDMAAAKRSQKIAELEKQLSYLE 313
>12_01_1069 -
11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = -1
Query: 451 LTSTYTPGVPCSPQPMPQDTIPDCQYRFV*FGMGHTSGDPPSPVQGSRPRCPPAHMNDSW 272
LT T G + +P D + V G + D P+ + P +W
Sbjct: 718 LTETGIKGGSHAQKPANLDNHKEKTQNTVWEENGEVANDEPAVQENGWGTWTPNASTSAW 777
Query: 271 SWNSLPAASCGLALAHL 221
S+ +L +++ G LAHL
Sbjct: 778 SYRALRSSALGPTLAHL 794
>10_08_0339 + 16922509-16923876,16923941-16924384,16924469-16924655,
16924750-16925702
Length = 983
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 234 ASPQDAAGRLFQL--HESFMCAGGQRGRDPCTGDGGSPLVCPIPNQTNRYWQS 386
A P DA F + ES + A G+ G D GDGG V P+P T+R W +
Sbjct: 903 ARPTDALIDAFGVATSESIVAAVGRGGDD---GDGGYGGVTPVP-PTSRRWDA 951
>09_02_0476 + 9728729-9730739,9730930-9730991
Length = 690
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -3
Query: 149 CPSRWRGTWSWQRESPWAAAXQATPTLGVRSTGDSRKSRAASYKNFPDG 3
CP+ +WS AA A P G G AA +KN+ +G
Sbjct: 129 CPTTPGSSWSKSSSDGDGAAAAAAPAGGGGGGGGGGDGGAAPFKNYENG 177
>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
Length = 422
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = -1
Query: 439 YTPGVPCSPQPMPQDTIPD----CQYRFV*FGMGHTSGDPPSPVQGSRPRCPPA 290
+ PG P ++ + D F FG GH G PP P PR P A
Sbjct: 369 FPPGFEAEPDEPEEEELEDPFAGVPPDFDFFGYGHGYGYPPPPPPEDPPRAPLA 422
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 152 PCPSRWRGTWSWQRESPWAAAXQATPTLGVRSTGD 48
PC + + T S ESPW A A P +RS D
Sbjct: 222 PCANEYSLT-SNLHESPWRGAGVAVPIFSIRSNED 255
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 331 PSPVQGSRPRCPPAHMNDSWSWNSLPAASCGLALA 227
P PV GS+P+ PP + S + +S P +++A
Sbjct: 58 PPPVAGSKPQLPPFSSSSSVASSSSPPLPSSVSVA 92
>04_04_1299 +
32450998-32451134,32451575-32452304,32452856-32453053,
32453398-32454065,32454555-32454978,32455917-32456009,
32456101-32456295,32456378-32456470,32456718-32456930,
32457015-32457104,32457239-32457400
Length = 1000
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 282 FMCAGGQRGRDPCTGDG 332
F C GG+RGR P G G
Sbjct: 29 FRCCGGRRGRSPFIGGG 45
>02_05_0819 - 32014236-32016059
Length = 607
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -1
Query: 343 SGDPPSPVQGSRPRCPPAHMNDSWSWNSLPAAS 245
SG PP PV S PR P + D W P S
Sbjct: 237 SGSPPVPVMHSPPR--PVTVKDQQDWKIPPCIS 267
>02_04_0592 - 24171698-24172285
Length = 195
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 80 SPXLPPPMDSPAAKTKCLATGWGKDKFGK 166
+P PP +S AA T T W K FGK
Sbjct: 167 TPQDDPPPESDAAPTDTKGTWWFKSLFGK 195
>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
Length = 288
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 346 TSGDPPSPVQGSRPRCPPA--HMNDSWSWNSL 257
+SG PSP + +R R +MN+SWSW +
Sbjct: 113 SSGGLPSPRKAARRRERELKIYMNESWSWRGI 144
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 27.5 bits (58), Expect = 8.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 213 SRTRCASASPQDAAGRLFQLHESFMCAGGQRGRDPCTGDGGSPLVCPI 356
S +R + + DA RL QLH + GG R G GGS + P+
Sbjct: 46 SSSRFFTTTRPDA--RLLQLHARRLVVGGARSFAAGVGGGGSSKLAPL 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,592,968
Number of Sequences: 37544
Number of extensions: 480747
Number of successful extensions: 2180
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2176
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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