Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30889
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    64   5e-11
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    54   7e-08
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    37   0.012
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    29   3.2  
Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    28   5.6  
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z82058-3|CAB04866.1|  349|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL031627-19|CAA20969.1|  349|Caenorhabditis elegans Hypothetical...    27   9.8  
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    27   9.8  
AC091124-1|AAK27878.1|  255|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +3

Query: 279 SFMCAGGQRGR-DPCTGDGGSPLVCPIPNQTNRYWQ-SGIVSWGIGCGEQGTPGVYVDVS 452
           S +CAG   G+ D C GD G PL+C      + +W+ +G+VSWGIGC   G PGVY +V 
Sbjct: 223 SMLCAGYSYGKIDSCQGDSGGPLMCA----RDGHWELTGVVSWGIGCARPGMPGVYGNVH 278

Query: 453 KIRAWID 473
               WI+
Sbjct: 279 SASTWIN 285


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 270 LHESFMCAGG-QRGRDPCTGDGGSPLVCPIPNQTNRYWQSGIVSWGIGCGEQGTPGVYVD 446
           +  S  CAG  + G D C GD G P  C    +   +  +G++SWG GC ++  PG+Y  
Sbjct: 191 MSRSAFCAGYLEGGIDSCQGDSGGPFACR--REDGAFVLAGVISWGDGCAQKKQPGIYTM 248

Query: 447 VSKIRAWI 470
           V+   +WI
Sbjct: 249 VAPYLSWI 256


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +3

Query: 285 MCAGGQ-RGRDPCTGDGGSPLVCPIPNQTNRYWQSGIVSWGI----GCGEQGT-PGVYVD 446
           +CAG    G  P  GD G PL+  I      Y Q GI S+G     G  +QG  PGVY  
Sbjct: 215 ICAGAYLHGTAP--GDSGGPLL--IHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTR 270

Query: 447 VSKIRAWI 470
           +SK   WI
Sbjct: 271 ISKYVPWI 278


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 318 CTGDGGSPLVCPIPNQTNRYWQSGIVS 398
           C  D G+PL C +  + N+Y Q GIVS
Sbjct: 197 CWDDIGAPLECVLDVENNKYVQVGIVS 223


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = -1

Query: 448 TSTYTPGVPCSPQPMPQDTIPDCQYRFV*FGMGHTSGDPPSPVQGSRPRCPP 293
           T  YTPG P  P P      P   YR V     H    PP+     +P C P
Sbjct: 163 TVRYTPG-PTPPGPWTYTAPPYYTYRTVPPASNHYETVPPAVQTTPQPPCTP 213


>Z70205-10|CAA94122.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/79 (27%), Positives = 28/79 (35%)
 Frame = -1

Query: 475 SSIHARILLTSTYTPGVPCSPQPMPQDTIPDCQYRFV*FGMGHTSGDPPSPVQGSRPRCP 296
           SS   R    S   P    +P P+P  T P      +          PP+P+Q S P  P
Sbjct: 217 SSASTRAKAASAVAP--EANPAPVPTATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRP 274

Query: 295 PAHMNDSWSWNSLPAASCG 239
           P    +S      P  S G
Sbjct: 275 PVAKQNSLQKPPEPKRSVG 293


>Z68003-5|CAA91979.2|  887|Caenorhabditis elegans Hypothetical
           protein E02H4.3a protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/79 (27%), Positives = 28/79 (35%)
 Frame = -1

Query: 475 SSIHARILLTSTYTPGVPCSPQPMPQDTIPDCQYRFV*FGMGHTSGDPPSPVQGSRPRCP 296
           SS   R    S   P    +P P+P  T P      +          PP+P+Q S P  P
Sbjct: 217 SSASTRAKAASAVAP--EANPAPVPTATKPSPFAPAIAPLRDGAPAQPPAPIQASAPLRP 274

Query: 295 PAHMNDSWSWNSLPAASCG 239
           P    +S      P  S G
Sbjct: 275 PVAKQNSLQKPPEPKRSVG 293


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = -1

Query: 448 TSTYTPGVPCSPQPMPQDTIPDCQYRFV*FGMGHTSGDPPSPVQGSRPRCPP 293
           T  YTPG P  P P      P   YR +     H    PP+     +P C P
Sbjct: 240 TVRYTPG-PTPPAPWTYTVPPYSGYRTIPPVYNHYETVPPAAQTTPQPPCTP 290


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
           protein Y76B12C.7 protein.
          Length = 1454

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 216 STTGTSIFFMMPRCLPSFPNLSLPQPVARHLVLAAGE-SMGGGKXGDAHVGSQINGRLKE 40
           S T  + +    + L    ++S+    +  +  AA E SMGGG  GD  V +  N  +K+
Sbjct: 637 SATSFATWHATAQNLTQLTSISIYADASEIMKFAAAEKSMGGGGGGDGEVSTAENAMMKK 696

Query: 39  K 37
           +
Sbjct: 697 E 697


>Z82058-3|CAB04866.1|  349|Caenorhabditis elegans Hypothetical
           protein T27C5.5 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 586 FCFSFFKLFIYLLKTKRYVIQILG 515
           FC +F  LFI +  T+ Y++ I+G
Sbjct: 57  FCSAFLDLFIAIFSTQYYLVPIVG 80


>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 284 ERLVELEQPPSRVLRTRAGTPGSRQPAPRSFS*CPG 177
           E LV ++Q   ++  +++GTPG+    P +F   PG
Sbjct: 56  ESLVRVQQQLLKMAASKSGTPGTNAGVPGAFPYGPG 91


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical protein
            C05D12.2 protein.
          Length = 1052

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 212  QPAPRSFS*CPGVSLPS-RTCPCPSRWRGTWSWQR 111
            Q  P   S C G ++     C CPSR+ G + W R
Sbjct: 949  QHLPADSSVCQGGNVDKFGRCICPSRYTGDYCWDR 983


>U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical
           protein M02D8.2 protein.
          Length = 127

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 309 RDPCTGDGGSPLV--CPIPNQTNRYWQSGIVSWGIGCGEQGTPGVYVDVSK 455
           + PCT    S  +   PIPN+   +WQ+G V   I  G    PG Y   S+
Sbjct: 10  KKPCTNPAPSDDLRWVPIPNEALEHWQNGNVGVMISPG----PGEYYYASR 56


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -2

Query: 252 PRLADSRWHTWFSTTGTSIFFMMPRCLPSFPNLSLP 145
           PRL    W T  ST GT +      C+   P  S P
Sbjct: 43  PRLVAGEWSTCSSTCGTGVMSRTVECVAVNPISSAP 78


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -2

Query: 252 PRLADSRWHTWFSTTGTSIFFMMPRCLPSFPNLSLP 145
           PRL    W T  ST GT +      C+   P  S P
Sbjct: 377 PRLVAGEWSTCSSTCGTGVMSRTVECVAVNPISSAP 412


>AL031627-19|CAA20969.1|  349|Caenorhabditis elegans Hypothetical
           protein Y102A5C.31 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 586 FCFSFFKLFIYLLKTKRYVIQILG 515
           FC +F  LFI +  T+ Y++ I+G
Sbjct: 57  FCSAFLDLFIAVFSTQYYLVPIVG 80


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 284 ERLVELEQPPSRVLRTRAGTPGSRQPAPRSFS*CPG 177
           E LV ++Q   ++  +++GTPG+    P  F   PG
Sbjct: 56  ESLVRVQQQLLKMAASKSGTPGTNAGVPGEFPYGPG 91


>AC091124-1|AAK27878.1|  255|Caenorhabditis elegans Hypothetical
           protein Y47A7.2 protein.
          Length = 255

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 139 RLGQGQVREGRETPGHHEKDRGAGCREPGVPARVRKTRLGG 261
           R+G+ + REG++  G ++K  G G        + ++T +GG
Sbjct: 203 RVGEDREREGKKAKGDNKKTGGIGKSLERAANKKKETPIGG 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,714
Number of Sequences: 27780
Number of extensions: 321867
Number of successful extensions: 1051
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)