Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30889
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    39   3e-05
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.96 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   6.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = +3

Query: 285 MCAGGQRGRDPCTGDGGSPLVCPIPNQTNRYWQSGIVSWGIGCGE 419
           MCA   +G+D C  D G P++   P +T R    GI+SWG  CG+
Sbjct: 335 MCAYA-KGKDACQMDSGGPVLWQNP-RTKRLVNIGIISWGAECGK 377


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 340 GDPPSPVQGSRPRCPP 293
           G PP+P QG  P  PP
Sbjct: 37  GSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -1

Query: 490 FSATFSSIHARILLTSTYTPGVPCSPQPMPQDTIPD 383
           F A        I+L  + TP  P  P P P  + PD
Sbjct: 319 FMALMEYCLVNIVLGDSDTPPKPAPPPPPPSSSGPD 354


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 89  LPPPMDSPAAKTKCLATGWGKDK 157
           LP PMD P A  + +   W K++
Sbjct: 857 LPAPMDCPEAIYQLMLDCWQKER 879


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 133 RHRLGQGQVREGRETPGHH 189
           R R G+G+ RE R  P H+
Sbjct: 316 RDRRGRGRSREHRIIPSHY 334


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 342 LVCPIPNQTNRYWQSGIVSWGIG 410
           L+  +P + + +WQ     WG+G
Sbjct: 83  LILGLPFELSVFWQQYPWQWGLG 105


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 158 TCPCPSRWRGTWS 120
           TCP    WRG +S
Sbjct: 245 TCPIKVSWRGNYS 257


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 158 TCPCPSRWRGTWS 120
           TCP    WRG +S
Sbjct: 296 TCPIKVSWRGNYS 308


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 158 TCPCPSRWRGTWS 120
           TCP    WRG +S
Sbjct: 245 TCPIKVSWRGNYS 257


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 321 TGDGGSPLVCPIPN 362
           T  GGSP + P PN
Sbjct: 101 TNRGGSPKLTPYPN 114


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 520 LGWLAFVSNPFSATFSSIHARI 455
           LGW+    NPF   F S   R+
Sbjct: 347 LGWINSAINPFIYAFYSADFRL 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,926
Number of Sequences: 438
Number of extensions: 4057
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)