Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30889
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing ...    30   0.99 
At1g75910.1 68414.m08817 family II extracellular lipase 4 (EXL4)...    29   2.3  
At4g19390.1 68417.m02854 expressed protein                             28   4.0  
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ...    28   4.0  
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    28   5.3  
At5g44330.1 68418.m05428 male sterility MS5 family protein simil...    27   7.0  
At1g77180.1 68414.m08991 chromatin protein family contains Pfam ...    27   7.0  
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro...    27   7.0  

>At3g47500.1 68416.m05166 Dof-type zinc finger domain-containing
           protein identical to H-protein promoter binding
           factor-2a GI:3386546 from [Arabidopsis thaliana]
          Length = 448

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 21/60 (35%), Positives = 22/60 (36%)
 Frame = +2

Query: 17  FYTTPLYFSLSRPLI*LPTWASPXLPPPMDSPAAKTKCLATGWGKDKFGKEGRHRGIMKK 196
           FY  P Y     P+   P W  P LPP   S     KC  T       GK  R  G  KK
Sbjct: 308 FYPPPGY-----PMPFYPYWTIPMLPPHQSSSPISQKCSNT--NSPTLGKHPRDEGSSKK 360


>At1g75910.1 68414.m08817 family II extracellular lipase 4 (EXL4)
           EXL4 (PMID:11431566); similar to anter-specific
           proline-rich protein (APG) SP:P40602 [Arabidopsis
           thaliana (Mouse-ear cress)]
          Length = 343

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 354 IPNQTNRYWQSGIVSWGIGCGEQGTPGVYVDVSKIRAWIDEKVAENGFDTKAN 512
           +  Q N   +SG  SWG   G +G   VYVD+      + +     GF  + N
Sbjct: 244 VAEQYNGKLRSGTKSWGREAGFRGAKFVYVDMYNTLMDVIKNYRRYGFSNEKN 296


>At4g19390.1 68417.m02854 expressed protein
          Length = 273

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 179 GVSLPSRTCPCPSRWRGTWSWQRESPWAAAXQATPTLGVRSTGDSRKSRAAS 24
           G+ LPSRT    +     WSW   SP   A  +T T    ST  +  S + +
Sbjct: 43  GLKLPSRTTKTIT--SSDWSWSYRSPGRLASASTSTSASTSTSAAVTSNSTN 92


>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 602

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 222 WFSTTGTSIFFMMPRCLPSFPNLSLPQPVARHLVLA 115
           WF       FF+  RC  +FP L++  P + H  LA
Sbjct: 142 WFYRCSICNFFLDFRCARNFPPLTIQNPRSHHHSLA 177


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -1

Query: 313 SRPRCPPAHMNDSWSWNSLPAASCGLALAHLVLD 212
           S P  PP H +  W    + A  C   L  LVLD
Sbjct: 397 SHPMLPPTHQHHMWDAWDMAAEICLSQLPQLVLD 430


>At5g44330.1 68418.m05428 male sterility MS5 family protein similar
           to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
           contains Pfam profile PF00515 TPR Domain
          Length = 469

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 24/87 (27%), Positives = 42/87 (48%)
 Frame = +3

Query: 240 PQDAAGRLFQLHESFMCAGGQRGRDPCTGDGGSPLVCPIPNQTNRYWQSGIVSWGIGCGE 419
           P+D     F  + S  C+GG +G+    G   S  +  I ++TN +  S  V       E
Sbjct: 279 PEDLLTSSFSDNFSSRCSGGMKGKKALAGT--STELGNI-HKTNSHASSESV-------E 328

Query: 420 QGTPGVYVDVSKIRAWIDEKVAENGFD 500
           Q +PG+     + + W+DE+V ++ +D
Sbjct: 329 QNSPGLTTQPRECK-WVDEEVDQSKWD 354


>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
           domain, PF02731: SKIP/SNW domain found in chromatin
           proteins.
          Length = 613

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 343 SGDPPSPVQGSRPRCPPAHMNDSWSWNSLPAAS 245
           SG PP PV  S PR  P  + D   W   P  S
Sbjct: 233 SGSPPVPVMHSPPR--PVTVKDQQDWKIPPCIS 263


>At1g59910.1 68414.m06749 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 929

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -3

Query: 269 LEQPPSRVLRTRAGTPGSRQPAPRSFS*CPGVSLPSRTCPCPSRW 135
           L  PP +     A  P S QP P  +      S PS T P P ++
Sbjct: 245 LPLPPGQFTAGNASFPSSTQPPPGQYM-AGNASFPSSTPPPPGQY 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,908,351
Number of Sequences: 28952
Number of extensions: 313109
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)